Gene detail information of Glyur000235s00019544.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49540.1 | 0 | elongator protein 2 |
| NR | XP_003555922.1 | 0 | PREDICTED: elongator complex protein 2-like [Glycine max] |
| COG | YP_001865069.1 | 3.00E-21 | hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|F4I1S7|ELP2_ARATH | 0 | Elongator complex protein 2 |
| trEMBL | tr|I1NFP8|I1NFP8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G25600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00235 | 81883 | 86836 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000235s00019544.1 | PF00400.27 | WD40 | 54 | 95 | 0.0066 |
| Glyur000235s00019544.1 | PF00400.27 | WD40 | 113 | 151 | 0.0069 |
| Glyur000235s00019544.1 | PF00400.27 | WD40 | 219 | 260 | 9.90E-07 |
| Glyur000235s00019544.1 | PF00400.27 | WD40 | 305 | 348 | 3.70E-06 |
| Glyur000235s00019544.1 | PF00400.27 | WD40 | 406 | 442 | 1.30E-05 |
| Glyur000235s00019544.1 | PF00400.27 | WD40 | 635 | 669 | 0.00074 |
| Glyur000235s00019544.1 | PF00400.27 | WD40 | 688 | 721 | 2.70E-10 |
| Glyur000235s00019544.1 | PF00400.27 | WD40 | 802 | 836 | 0.00074 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.509 |
| SRR1783600 | control | 5.593 |
| SRR1783602 | moderate drought stress | 7.447 |
| SRR1811619 | moderate drought stress | 7.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.863 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.859 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.011 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.798 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.703 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.494 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.984 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.995 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.205 |
| SRR2967015 | Control (Tissue:root) | 10.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.415 |
| SRR9715740 | Leave | 5.591 |
| SRR9715741 | Leave | 4.891 |
| SRR9715739 | Root | 10.067 |
| SRR9715742 | Root | 12.566 |
| SRR9715743 | Root | 12.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.201 |
| SRR8749028 | MeJA induced 9h | 11.021 |
| SRR8749029 | MeJA induced 9h | 7.251 |
| SRR8749030 | Uninduced | 2.713 |
| SRR8749031 | Uninduced | 1.063 |
| SRR8749032 | Uninduced | 1.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.803 |
| SRR8400027 | Control-Root | 8.906 |