Gene detail information of Glyur000236s00014218.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G10940.20transducin family protein / WD-40 repeat family protein
NRXP_004501615.10PREDICTED: WD and tetratricopeptide repeats protein 1-like isoform X1 [Cicer arietinum]
COGYP_007073141.13.00E-07WD40 repeat-containing protein [Leptolyngbya sp. PCC 7376]
Swissprottr|Q8H0T9|KTNB1_ARATH3.00E-06Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|I1JV48|I1JV48_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G09890.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002361125819926+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000236s00014218.1PF00400.27WD401313.90E-06
Glyur000236s00014218.1PF00400.27WD405646030.037
Glyur000236s00014218.1PF00400.27WD406096441.50E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.676
SRR1783600control20.785
SRR1783602moderate drought stress31.365
SRR1811619moderate drought stress31.284

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.407
DRR006520Root Summer glycyrrhizin high producing strain25.122
DRR006521Root Winter glycyrrhizin high producing strain67.522
DRR006522Root Winter glycyrrhizin high producing strain66.146
DRR006523Root Summer glycyrrhizin low producing strain27.077
DRR006524Root Summer glycyrrhizin low producing strain26.990
DRR006525Leaf Summer glycyrrhizin high producing strain14.165
DRR006526Leaf Summer glycyrrhizin high producing strain13.998

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.733
SRR2868004Drought Stress(Tissue:root)26.738
SRR2967015Control (Tissue:root)26.391

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.080
SRR9715740Leave12.405
SRR9715741Leave21.138
SRR9715739Root7.867
SRR9715742Root17.526
SRR9715743Root16.719

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.940
SRR8749028MeJA induced 9h24.471
SRR8749029MeJA induced 9h17.125
SRR8749030Uninduced14.656
SRR8749031Uninduced12.827
SRR8749032Uninduced13.296

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.396
SRR8400027Control-Root27.212

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved