Gene detail information of Glyur000236s00014221.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28390.1 | 9.00E-97 | Protein kinase superfamily protein |
| NR | XP_004501618.1 | 0 | PREDICTED: serine/threonine-protein kinase-like protein At1g28390-like [Cicer arietinum] |
| COG | YP_008151634.1 | 5.00E-17 | hypothetical protein SCE1572_26190 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q9SGN7|CCR12_ARATH | 8.00E-136 | Serine/threonine-protein kinase-like protein At1g28390 |
| trEMBL | tr|I1JV49|I1JV49_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G09900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00236 | 30020 | 31663 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.14.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000236s00014221.1 | PF00069.20 | Pkinase | 64 | 342 | 1.90E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.623 |
| SRR1783600 | control | 15.678 |
| SRR1783602 | moderate drought stress | 13.855 |
| SRR1811619 | moderate drought stress | 13.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.697 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.298 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.370 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.278 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.052 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.124 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.036 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.987 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.551 |
| SRR2967015 | Control (Tissue:root) | 15.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.103 |
| SRR9715740 | Leave | 2.539 |
| SRR9715741 | Leave | 3.828 |
| SRR9715739 | Root | 19.551 |
| SRR9715742 | Root | 20.882 |
| SRR9715743 | Root | 19.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.367 |
| SRR8749028 | MeJA induced 9h | 4.910 |
| SRR8749029 | MeJA induced 9h | 6.917 |
| SRR8749030 | Uninduced | 0.429 |
| SRR8749031 | Uninduced | 0.267 |
| SRR8749032 | Uninduced | 1.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.079 |
| SRR8400027 | Control-Root | 17.479 |