Gene detail information of Glyur000236s00014224.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G49970.16.00E-150pyridoxin (pyrodoxamine) 5'-phosphate oxidase
NRXP_004501612.10PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic-like [Cicer arietinum]
COGYP_007143206.12.00E-78pyridoxamine 5'-phosphate oxidase [Crinalium epipsammum PCC 9333]
Swissprottr|Q9LTX3|PPOX1_ARATH0Probable NAD(P)HX epimerase (Precursor)
trEMBLtr|I1JV54|I1JV54_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G09950.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002366213367150-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00275pdxH, PNPO EC:1.4.3.5 Vitamin B6 metabolism map00750


Gene Ontology

biological_process

GO:0008615  pyridoxine biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004733  pyridoxamine-phosphate oxidase activity

GO:0010181  FMN binding

GO:0016491  oxidoreductase activity

GO:0016638  oxidoreductase activity, acting on the CH-NH2 group of donors


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000236s00014224.1PF03853.10YjeF_N41851.70E-09
Glyur000236s00014224.1PF01243.15Pyridox_oxidase1622486.20E-26
Glyur000236s00014224.1PF10590.4PNPOx_C3023462.80E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.583
SRR1783600control7.656
SRR1783602moderate drought stress6.750
SRR1811619moderate drought stress6.787

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.736
DRR006520Root Summer glycyrrhizin high producing strain10.501
DRR006521Root Winter glycyrrhizin high producing strain6.786
DRR006522Root Winter glycyrrhizin high producing strain6.650
DRR006523Root Summer glycyrrhizin low producing strain5.350
DRR006524Root Summer glycyrrhizin low producing strain5.420
DRR006525Leaf Summer glycyrrhizin high producing strain13.484
DRR006526Leaf Summer glycyrrhizin high producing strain13.436

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.018
SRR2868004Drought Stress(Tissue:root)13.109
SRR2967015Control (Tissue:root)12.695

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.661
SRR9715740Leave24.438
SRR9715741Leave19.853
SRR9715739Root8.245
SRR9715742Root8.031
SRR9715743Root9.039

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.281
SRR8749028MeJA induced 9h8.565
SRR8749029MeJA induced 9h10.616
SRR8749030Uninduced2.503
SRR8749031Uninduced0.655
SRR8749032Uninduced2.277

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.078
SRR8400027Control-Root15.830

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved