Gene detail

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Gene detail information of Glyur000236s00014234.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06870.1	2.00E-108	Peptidase S24/S26A/S26B/S26C family protein
NR	XP_004501604.1	0	PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic-like isoform X2 [Cicer arietinum]
COG	YP_007166994.1	6.00E-54	signal peptidase I [Halothece sp. PCC 7418]
Swissprot	tr\|Q9M9Z2\|TPP2_ARATH	8.00E-135	Probable thylakoidal processing peptidase 2, chloroplastic (Precursor)
trEMBL	tr\|G7J5Q2\|G7J5Q2_MEDTR	0	Processing peptidase {ECO:0000313\|EMBL:AES73218.1}

Sequence

Transcript Sequence

>Glyur000236s00014234.1
GTAAAGCAAGGGGAGTAGCTAGCCGCCGTCTTTTAAAACCCATTTGTCTTTCTCTCTCTCTCTCTGTTTTGATATTTATTCGTGCTCTCTCCCAAACGCAACAACCCCAGCAAAGCGAGTGAGTCAAAACTCTATCTCTCTCTGTAGCTTCCGGTGTTTTGGGGGGTCGCATCGCCGGCGATTCCCTTTCTGATTTCCTCTCCACCCTTCGATTCAACCCTACCTCCTTGGCCTCACTGATTTCTCCTCTGAAAATGCTTACCATCGCTTGCTAGGGTTTCCACCATCTCAAACCTNTCTCCCCAGAACCACACTGTACCTCTTCTCCCTGTGTTTAATCATATTCGCAGTTATGGCTATCCGTGTTACCTTTTCCTTCTCCGGCTATGTCGCCCAGAATCTCGTTTCCTCCGCCGGAGTCCGCGTCGCCAATTCCCGTTGCGTCCAAGAATGCTGGATCCTCTCTCGCATCTTCGGCGCAAACCAGAAGCCCGATCTCGACCGTTCCGGCGGAGTGCGGAATTTCTACTCCGATCTCAGAAAGCCCAAATCCAATTGCTGGGCCAAAAACTCCTCTGCCTGTGCCTCTGCCTATTCTACCCTCGCCGGAGAGATCCTCGGCGACGGCTGTTATAAGAACCCCATCATCTTAGGTTTGATTTCGATGATGAAGTCAACGGCTGGTGTTTCTGGGTCATCGACGGCGGCTATGGGTATTATGGGAATTTCCCCCTTCAAGACCTCTTCGATCATACCCTTCCTTCAGGGTTCCAAGTGGCTTCCTTGTAACGAGTCCGTTCCCGATACAACAACCTGGGAGGTCGATAAAGGTGGAACGGGAACGGCATGTGTTGTTGCCAATAACAACCCTTCTCTCAGTCGAAACGATATTGAGAGGAACGGTTGGATTTCGCGGTTTCTCAGCACTTGTTCTGAAGATGCTAAGGCAGCTTTCACTGCTGTTACTGTTAGTTTGCTCTTTAAGTCCTTATTGGCTGAACCTAAATCCATTCCCTCTTCCTCTATGTACCCAACTCTCGAAGTGGGTGATCGCATTCTAACCGAGAAGGTTTCCTTCTTCTTTAGAAAGCCTGGTGTCTCTGATATAGTGATTTTCAAAGCGCCTCCTATTTTAAAGCAATTTGGTTTTAGTTCATCTGATGTATTTGTTAAGAGGATCGTGGCTAAGGCTGGTGACATTGTTGAAGTTCGTGGTGGGAAACTACTGGTGAATGGTGTTGCCGAAGAAGAGGAATTCGTACGAGAGCCTCTTGCATATGAGTTTCCTCCAATGGTTGTGCCAGAAGGACATGTTTTTGTGTTGGGAGACAATCGTAACAAGAGTTTTGATTCTCATAACTGGGGTCCACTCCCTGTTGAGAACATCGTTGGCAGATCCATGTTTCGCTACTGGCCTCCATCAAGAGGACCTGACTCTGTCACCGTTCATAATCCCCTATCTGGAAACAATTCTGTGGCAGTTTCTTGACATGATTTCCTCTGCATTCTGATGGTGATGAAGGGTTCCAGATACTTTCATTTGTTCTAAATGAATCTCTCCTCCAGTTTGACCCTGGGAGTGAGCTGTTATTCAAGGATTCTCCAAGATGAGCCTGCTTGTCTTGAACACAGTTGGGATGAATATCTTATTCTCATTGATGCAAATTTTCAATGACCAAATAATGACGCTATGCGTTCTTTAGTGCTATCCTGGGATGCTTTTCTCCTTGCAAAAAATAGTTTGGGGGAAAAGAAAAATCAAAGAAACATGATGATTCAAAAAAAAATGATGGTGGATTTGTGTTGTATTCTTTCATGTGTAGTTTATGGGTGCTAGAAACTCAAGGAAAGCTTCGACATTGAGCTATTTCACTCCTTGTTTAGCTGGCTTCTACAAACAGAGATACTGGAACAGAAACATAAAAAATTACAGTTTTTACATTCCTTTAGGCCTAATTAATAATAATAATTAANCTAAACCTTGGCGATGTCAACATTATTATCTGTCGAATCACCTTCTTGCTTGTCTTCCACCGTTTTGTATCTATACCAAGAAGCACAAACCAAGTAAAACCCAAAGTTCACAACGCTTATGACAGCCAACAGCCAGTAAAAGTAATTGAGCTTGTCCCTATTCAAGTTGTTACTGGCCAACCACCCTCCACTCACCTTGTTAACCACCTCAACGACCANAGTGCTCGTAAAGTAACCGAACGCAACAGAACACCAAGAGATCGCCGTGCTCAGCGATTTCATCCCAGCCGAACTTTCCGCATAGAAAAACTCGAGAAGCCCAATCAGTGTGAACATATCAGCGGCTCCAAAAATAGCATATTGGTAACCCAACCAAAACACACTTATTGGTAAAGGCTCTGTGCTATCCACCATGTCGTTTTGAATTGCCACTGACTTGCGGCGTGTCTCTACCAAACCTGCAACTGCCATGGATATAGCTGAGAGAACCAATCCGATTCCGATCCTCTGAAGGTGTCGGATTCCGGTTGGAATTCCTGTGATTCTTCGAGCGAGTGGGACGAAGAAGCGGTCGTATAGAGGGATTAGGACGAACATGAATAACAGAGGGATGACTGGAAGAGATGGCCCTGGCACTTTGAACCCCCCGATTTTGGTGTCCATGGTTGTGCTTTGCTGTATGCTGAATGTCTGAAGCTGCGCCAAACATGTGTTCATGAATATGGTGCTTATTATTATTGGTAGCATGCGGATTAGGATTTTCGTTTCTTCTACTTGTGTCACTGTGCATAGACTCCAGGGTCCTGTGGACCTTGTTGCACCTGTAATATTGCTTCTAGCAATTGCTCCCCGGTCCAANAATCTGGGAAATAATCCAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00236	102285	106953	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03100	lepB, TPP	EC:3.4.21.89	Protein export	map03060
K03100	lepB, TPP	EC:3.4.21.89	Quorum sensing	map02024

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component GO:0016020 membrane GO:0016021 integral component of membrane molecular_function GO:0008236 serine-type peptidase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000236s00014234.1	PF10502.4	Peptidase_S26	249	348	6.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.750
SRR1783600	control	47.314
SRR1783602	moderate drought stress	41.540
SRR1811619	moderate drought stress	41.279

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.314
DRR006520	Root Summer glycyrrhizin high producing strain	36.028
DRR006521	Root Winter glycyrrhizin high producing strain	26.344
DRR006522	Root Winter glycyrrhizin high producing strain	25.811
DRR006523	Root Summer glycyrrhizin low producing strain	39.081
DRR006524	Root Summer glycyrrhizin low producing strain	39.165
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.050
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.872

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	98.456
SRR2868004	Drought Stress(Tissue:root)	148.621
SRR2967015	Control (Tissue:root)	116.031

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	143.240
SRR9715740	Leave	138.844
SRR9715741	Leave	222.539
SRR9715739	Root	47.221
SRR9715742	Root	80.127
SRR9715743	Root	72.884

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	103.086
SRR8749028	MeJA induced 9h	120.142
SRR8749029	MeJA induced 9h	61.405
SRR8749030	Uninduced	96.832
SRR8749031	Uninduced	71.721
SRR8749032	Uninduced	49.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	70.518
SRR8400027	Control-Root	59.537