Gene detail information of Glyur000236s00014254.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26540.15.00E-89uroporphyrinogen-III synthase family protein
NRXP_004501590.10PREDICTED: uroporphyrinogen-III synthase, chloroplastic-like [Cicer arietinum]
COGYP_004368530.16.00E-63uroporphyrinogen-III synthase [Marinithermus hydrothermalis DSM 14884]
Swissprottr|O48721|HEM4_ARATH1.00E-119Uroporphyrinogen-III synthase, chloroplastic (Precursor)
trEMBLtr|G7J5U1|G7J5U1_MEDTR4.00E-172Uroporphyrinogen III synthase {ECO:0000313|EMBL:AES73257.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00236207235213331-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01719hemD, UROS EC:4.2.1.75 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0033014  tetrapyrrole biosynthetic process


molecular_function

GO:0004852  uroporphyrinogen-III synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000236s00014254.1PF02602.10HEM4662885.80E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.992
SRR1783600control39.023
SRR1783602moderate drought stress46.427
SRR1811619moderate drought stress45.913

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.972
DRR006520Root Summer glycyrrhizin high producing strain16.664
DRR006521Root Winter glycyrrhizin high producing strain48.215
DRR006522Root Winter glycyrrhizin high producing strain47.280
DRR006523Root Summer glycyrrhizin low producing strain18.120
DRR006524Root Summer glycyrrhizin low producing strain17.522
DRR006525Leaf Summer glycyrrhizin high producing strain19.923
DRR006526Leaf Summer glycyrrhizin high producing strain19.858

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.061
SRR2868004Drought Stress(Tissue:root)14.161
SRR2967015Control (Tissue:root)13.590

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.255
SRR9715740Leave28.899
SRR9715741Leave22.767
SRR9715739Root19.741
SRR9715742Root16.606
SRR9715743Root19.068

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.463
SRR8749028MeJA induced 9h9.570
SRR8749029MeJA induced 9h11.288
SRR8749030Uninduced11.395
SRR8749031Uninduced7.971
SRR8749032Uninduced9.935

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.750
SRR8400027Control-Root55.090

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved