Gene detail information of Glyur000237s00014396.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02130.3 | 4.00E-111 | galacturonosyltransferase 6 |
| NR | XP_003554536.1 | 7.50E-143 | PREDICTED: probable galacturonosyltransferase-like 7-like [Glycine max] |
| Swissprot | tr|O04253|GATL6_ARATH | 2.00E-136 | Probable galacturonosyltransferase-like 6 |
| trEMBL | tr|I1NBA3|I1NBA3_SOYBN | 3.00E-143 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G40180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00237 | 59561 | 61372 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000237s00014396.1 | PF01501.15 | Glyco_transf_8 | 230 | 367 | 1.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.000 |
| SRR1783600 | control | 7.195 |
| SRR1783602 | moderate drought stress | 6.408 |
| SRR1811619 | moderate drought stress | 6.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.381 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.257 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.086 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.609 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.138 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.534 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.595 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.604 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.231 |
| SRR2967015 | Control (Tissue:root) | 10.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.240 |
| SRR9715740 | Leave | 0.052 |
| SRR9715741 | Leave | 0.077 |
| SRR9715739 | Root | 1.577 |
| SRR9715742 | Root | 0.924 |
| SRR9715743 | Root | 1.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.086 |
| SRR8749028 | MeJA induced 9h | 4.349 |
| SRR8749029 | MeJA induced 9h | 3.671 |
| SRR8749030 | Uninduced | 2.003 |
| SRR8749031 | Uninduced | 1.219 |
| SRR8749032 | Uninduced | 2.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.069 |
| SRR8400027 | Control-Root | 3.051 |