Gene detail information of Glyur000237s00014399.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16850.1 | 3.00E-152 | Pectin lyase-like superfamily protein |
| NR | XP_006604728.1 | 0 | PREDICTED: probable polygalacturonase-like [Glycine max] |
| COG | YP_001179193.1 | 3.00E-54 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 4.00E-138 | Probable polygalacturonase |
| trEMBL | tr|K7MZJ3|K7MZJ3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G40100.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00237 | 66161 | 69829 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000237s00014399.1 | PF00295.12 | Glyco_hydro_28 | 153 | 364 | 1.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.299 |
| SRR1783600 | control | 0.298 |
| SRR1783602 | moderate drought stress | 0.648 |
| SRR1811619 | moderate drought stress | 0.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.276 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.119 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.294 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.169 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.889 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.928 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.128 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.182 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.856 |
| SRR2967015 | Control (Tissue:root) | 1.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.118 |
| SRR9715740 | Leave | 0.261 |
| SRR9715741 | Leave | 0.489 |
| SRR9715739 | Root | 0.353 |
| SRR9715742 | Root | 0.473 |
| SRR9715743 | Root | 0.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.476 |
| SRR8749028 | MeJA induced 9h | 13.395 |
| SRR8749029 | MeJA induced 9h | 16.755 |
| SRR8749030 | Uninduced | 22.256 |
| SRR8749031 | Uninduced | 16.672 |
| SRR8749032 | Uninduced | 11.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.021 |
| SRR8400027 | Control-Root | 1.281 |