Gene detail information of Glyur000237s00014408.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G02730.10cellulose synthase-like D5
NRXP_007051035.10Cellulose synthase-like D5 [Theobroma cacao]
COGYP_007129238.11.00E-15glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428]
Swissprottr|Q9SRW9|CSLD5_ARATH0Cellulose synthase-like protein D5
trEMBLtr|A0A061DS29|A0A061DS29_THECC0Cellulose synthase-like D5 {ECO:0000313|EMBL:EOX95192.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00237118367122710+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00770E2.4.2.24 EC:2.4.2.24 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0016760  cellulose synthase (UDP-forming) activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000237s00014408.1PF14570.1zf-RING_41642083.10E-08
Glyur000237s00014408.1PF03552.9Cellulose_synt39811630


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.083
SRR1783600control3.095
SRR1783602moderate drought stress1.909
SRR1811619moderate drought stress1.944

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.841
DRR006520Root Summer glycyrrhizin high producing strain6.741
DRR006521Root Winter glycyrrhizin high producing strain3.957
DRR006522Root Winter glycyrrhizin high producing strain3.771
DRR006523Root Summer glycyrrhizin low producing strain1.723
DRR006524Root Summer glycyrrhizin low producing strain1.611
DRR006525Leaf Summer glycyrrhizin high producing strain0.634
DRR006526Leaf Summer glycyrrhizin high producing strain0.632

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.206
SRR2868004Drought Stress(Tissue:root)8.221
SRR2967015Control (Tissue:root)13.391

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.727
SRR9715740Leave0.124
SRR9715741Leave0.672
SRR9715739Root7.672
SRR9715742Root3.325
SRR9715743Root3.998

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.956
SRR8749028MeJA induced 9h7.195
SRR8749029MeJA induced 9h4.006
SRR8749030Uninduced0.246
SRR8749031Uninduced0.316
SRR8749032Uninduced0.448

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.720
SRR8400027Control-Root9.922

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved