Gene detail information of Glyur000237s00014411.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G01970.1 | 0 | stachyose synthase |
NR | XP_004494437.1 | 0 | PREDICTED: stachyose synthase-like [Cicer arietinum] |
COG | YP_004464004.1 | 4.00E-23 | raffinose synthase [Mahella australiensis 50-1 BON] |
Swissprot | tr|Q93XK2|STSYN_PEA | 0 | Stachyose synthase (Precursor) |
trEMBL | tr|I1NBD9|I1NBD9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G40550.1} |
Sequence
Transcript Sequence |
---|
Protein Sequence |
---|
Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00237 | 131173 | 134218 | + |
Gene family
Gene family | subfamily |
---|---|
Carbohydrate-Active enzymes Family | GH36 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K06611 | E2.4.1.67 | EC:2.4.1.67 | Galactose metabolism | map00052 |
Gene Ontology
|
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000237s00014411.1 | PF05691.7 | Raffinose_syn | 38 | 870 | 0 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.517 |
SRR1783600 | control | 0.516 |
SRR1783602 | moderate drought stress | 0.430 |
SRR1811619 | moderate drought stress | 0.560 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.366 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.201 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 2.766 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 2.389 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.311 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.228 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.069 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.034 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 0.857 |
SRR2868004 | Drought Stress(Tissue:root) | 0.234 |
SRR2967015 | Control (Tissue:root) | 0.604 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.135 |
SRR9715740 | Leave | 0.524 |
SRR9715741 | Leave | 0.235 |
SRR9715739 | Root | 0.177 |
SRR9715742 | Root | 0.295 |
SRR9715743 | Root | 0.180 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.027 |
SRR8749028 | MeJA induced 9h | 0.000 |
SRR8749029 | MeJA induced 9h | 0.023 |
SRR8749030 | Uninduced | 0.000 |
SRR8749031 | Uninduced | 0.000 |
SRR8749032 | Uninduced | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.539 |
SRR8400027 | Control-Root | 0.255 |