Gene detail

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Gene detail information of Glyur000237s00014411.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01970.1	0	stachyose synthase
NR	XP_004494437.1	0	PREDICTED: stachyose synthase-like [Cicer arietinum]
COG	YP_004464004.1	4.00E-23	raffinose synthase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q93XK2\|STSYN_PEA	0	Stachyose synthase (Precursor)
trEMBL	tr\|I1NBD9\|I1NBD9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40550.1}

Sequence

Transcript Sequence

>Glyur000237s00014411.1
CTGTTTCTCTCATTCTCTGTTTCATTCCCTTCTCCATTTTCCATGGCTCAACCCAATGACCCAGTTAATTCCACCCTGGGACTCGTCAAGTCCGAGTCTTTGGAAACCATTTTCGATTTATCCGACGGAAAGTTCACCGTTAGAGGCGTGCCGTTACTCTCTCATGTCCCTGAGAATGTCTCTTTCACTCCCTTCTCCACTCTCTGTCAGTGCCAATCCCCTGAATCCGATGCCCCACCTTCACTCCTTCAGCGNGTCCTTGCTCTCTCTCACAAAGGTGGCTTCTTTGGGTTCTCCCAGGATAACCCTTCTGATAGGTTGATNAATTCCCTGGGTAGTTTCAGTAACAGAGACTTCCTCAGCATTTTCAGGTTCAAAACCTGGTGGTCTACCCAATGGGTGGGAAATTCTGGTTCGGATTTACAAATGGAAACCCAATGGGTACTTTTCGACATTCCTGAAATAAAATCCTATGTTATAATCATTCCCATCATCGAAGCAAGTTTTAGGTCTGCACTCCACCCTGGCTCTGATGGCCACGTCATGATTTGTGCTGAGAGTGGTTCTACCCAAGTGAAAGCATCAAAATTCGANGCAATTGCCTATGTTCACTTGTCTGAGAACCCTTACAACTTGATGAGAGAGGCCTATAGTGCTCTGAGGGTTCGCCTCAACAGTTTCAGGCTTTTGGAGGAGAAAACGCTGCCAAATTTGGTTGACAAGTTCGGTTGGTGCACCTGGGATGCATTCTATTTAACCGTGGACCCTGTTGGGGTTTGGAATGGCCTCAAGGATTTCTCTGAAGGTGGCGTGGCTCCAAGGTTTGTTATCATCGACGATGGGTGGCAGAGCATTAATTTGGACGGTTGTGATGACCCCAACGAGGACGCAAAGAACCTTGTTCTGGGTGGTGAACAAATGACGGCTAGGCTTCATAGGCTCGATGAAGGTGACAAGTTCAAAAGATACAAAGGTGGACTCTTGTTGGGTCCCAATGCTCCTCCTTTCAACCCAAATACGGTTAAGGAGTTGATTGCAAAGGGAATTGAACACGAGCGTTTGGAGAGGCAAAAGGAAGAAGTTATTCTCTCTGGGGGTGGTTCCAATTTGGCTGAGATTGAGTCAGGGATCAAGCAGGTAATAAAGGAAATTGATGAACTCTTTGGGGGAGAACAAAGCCAAAGCNATAATGGAGAATGTGGAAGCTGTTGTTGCAAAGNACAAGAGGAGTATTATGGGTTGAGGGCTTTCACGAGNGACTTGAGGACCGAATTCAAAGGTTTGGATGATGTTTACGTGTGGCATGCACTTTGTGGTGCGTGGGGTGGTGTGAGGCCAGGAACCACACACCTCAATTCGAAGATTGTCCCTTGCAAACTCTCCCCTGGACTTGATGGGACAATGCATGATCTTGCTGTGGTTAACATTGTCAAAGGTTCCNTTGGGCTTGTTCATCCTGATCAAGCCAATGATTTCTATGACTCCATGCACTCTTGTCTTGCCCAATCTGGTATCACTGGAGTCAAAGTTGACGTCATTCACACTCTTGAATATGTTTGTGATGAATATGGAGGCAGAGTTGAGCTTGCCAAGGCTTACTATGAAGGGTTGACAAAATCCATAGCCAAGAACTTCAATGGAAATGGAATCATTGCTAGCATGCAGCAGTGCAACGACTTTTTCTTCCTCGGAACCAAGCAAGTTTCCATGGCAAGAGCTGGGGATGACTTTTGGGTCCAAGGACCCAGTGGCGATCCAATGGGAGCGTTTTGGTTACAAGGGGTACACATGATTCATTGTTCCTACAATAGCTTGTGGATGGGGCAGATGATTCATCCAGATTGGGACATGTTCCAATCAGATCACGTGTGTGCCAAATTCCATGCAGGTTCAAGGGCTATTTGTGGTGGTCCAATCTATTTGAGTGATAATGTGGGTTCCCATGACTTTGATCTGATTAAGAAGCTTGTGTTCCCTGATGGTACCGTACCCAAGTGCATCTATTTCCCCCTTCCAACCAGAGATTNTCTTTTCAAGAACCCTCTCTTCGACCAAAAAACTGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTGATTGGTGCTTTCAACTGTCAAGGGGCAGGGTGGGACCCCAAGATGCAGAAGATCAGGGGTTTCCCTGAGTGCTACAAGCGAGTATCTGGTACTGTGCATGTAACTGAGGTTGAATGGGATCAGAAGAAAGAAGCATCCCACATGGGTAAGGCAGAGGAATACATAGCGTACCTCAATCAGGCTGAAGAATTGTGCTTGATGACACCCAAATCTGAACCAATCCAATTCACCATCCAACCTTCCACCTTTGAGCTATACAGCTTTGTCCCAGTCACAAAGCTAGGTGGCATCAAATTTGCACCAATTGGGCTGACAAACATGTTCAACAGTGGTGGAACAATTCTAGAATTGGAACATGTTGAGAGTGGAGCTGAGGTTGGTGCTAAGCTTAAGGTCAAAGGTGGTGGGAATTTCCTTGCTTACTCAAGTGAATCCCCAAAGAAGTTNCAACTGAATGGTTCTGAGGTTGCTTTTGGGTGGAAGCCTGATGGCAAACTGACCCTCAACCTTCCTTGGATTGAAGAGGCTGGAGGGGTTTCTGATTTGGCAATTTTCTTCTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00237	131173	134218	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH36

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06611	E2.4.1.67	EC:2.4.1.67	Galactose metabolism	map00052

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000237s00014411.1	PF05691.7	Raffinose_syn	38	870	0

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.517
SRR1783600	control	0.516
SRR1783602	moderate drought stress	0.430
SRR1811619	moderate drought stress	0.560

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.366
DRR006520	Root Summer glycyrrhizin high producing strain	0.201
DRR006521	Root Winter glycyrrhizin high producing strain	2.766
DRR006522	Root Winter glycyrrhizin high producing strain	2.389
DRR006523	Root Summer glycyrrhizin low producing strain	0.311
DRR006524	Root Summer glycyrrhizin low producing strain	0.228
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.069
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.034

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.857
SRR2868004	Drought Stress(Tissue:root)	0.234
SRR2967015	Control (Tissue:root)	0.604

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.135
SRR9715740	Leave	0.524
SRR9715741	Leave	0.235
SRR9715739	Root	0.177
SRR9715742	Root	0.295
SRR9715743	Root	0.180

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.027
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.023
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.539
SRR8400027	Control-Root	0.255