Gene detail information of Glyur000237s00014411.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G01970.10stachyose synthase
NRXP_004494437.10PREDICTED: stachyose synthase-like [Cicer arietinum]
COGYP_004464004.14.00E-23raffinose synthase [Mahella australiensis 50-1 BON]
Swissprottr|Q93XK2|STSYN_PEA0Stachyose synthase (Precursor)
trEMBLtr|I1NBD9|I1NBD9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G40550.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00237131173134218+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH36


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06611E2.4.1.67 EC:2.4.1.67 Galactose metabolism map00052


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000237s00014411.1PF05691.7Raffinose_syn388700


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.517
SRR1783600control0.516
SRR1783602moderate drought stress0.430
SRR1811619moderate drought stress0.560

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.366
DRR006520Root Summer glycyrrhizin high producing strain0.201
DRR006521Root Winter glycyrrhizin high producing strain2.766
DRR006522Root Winter glycyrrhizin high producing strain2.389
DRR006523Root Summer glycyrrhizin low producing strain0.311
DRR006524Root Summer glycyrrhizin low producing strain0.228
DRR006525Leaf Summer glycyrrhizin high producing strain0.069
DRR006526Leaf Summer glycyrrhizin high producing strain0.034

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.857
SRR2868004Drought Stress(Tissue:root)0.234
SRR2967015Control (Tissue:root)0.604

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.135
SRR9715740Leave0.524
SRR9715741Leave0.235
SRR9715739Root0.177
SRR9715742Root0.295
SRR9715743Root0.180

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.027
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.023
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.539
SRR8400027Control-Root0.255