Gene detail information of Glyur000237s00014418.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G02280.10sucrose synthase 3
NRXP_004494391.10PREDICTED: sucrose synthase 2-like isoform X2 [Cicer arietinum]
COGYP_003529337.10sucrose synthase [Nitrosococcus halophilus Nc 4]
Swissprottr|O24301|SUS2_PEA0Sucrose synthase 2
trEMBLtr|A0A072U5L4|A0A072U5L4_MEDTR0Sucrose synthase {ECO:0000256|RuleBase:RU280817}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00237167307173495+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT4


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00695E2.4.1.13 EC:2.4.1.13 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005985  sucrose metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0016157  sucrose synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000237s00014418.2PF00862.14Sucrose_synth786250
Glyur000237s00014418.2PF00534.15Glycos_transf_16378102.40E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control53.942
SRR1783600control54.860
SRR1783602moderate drought stress91.225
SRR1811619moderate drought stress90.410

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain71.721
DRR006520Root Summer glycyrrhizin high producing strain71.336
DRR006521Root Winter glycyrrhizin high producing strain2088.922
DRR006522Root Winter glycyrrhizin high producing strain2036.397
DRR006523Root Summer glycyrrhizin low producing strain114.163
DRR006524Root Summer glycyrrhizin low producing strain113.949
DRR006525Leaf Summer glycyrrhizin high producing strain15.571
DRR006526Leaf Summer glycyrrhizin high producing strain15.022

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)65.723
SRR2868004Drought Stress(Tissue:root)123.003
SRR2967015Control (Tissue:root)159.748

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.668
SRR9715740Leave35.161
SRR9715741Leave62.467
SRR9715739Root62.591
SRR9715742Root122.614
SRR9715743Root119.229

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h279.604
SRR8749028MeJA induced 9h821.984
SRR8749029MeJA induced 9h585.359
SRR8749030Uninduced425.935
SRR8749031Uninduced959.841
SRR8749032Uninduced790.487

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root83.560
SRR8400027Control-Root82.713

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved