Gene detail information of Glyur000237s00014421.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02320.1 | 4.00E-132 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_007145198.1 | 0 | hypothetical protein PHAVU_007G218500g [Phaseolus vulgaris] |
| COG | YP_004318102.1 | 6.00E-39 | pectinesterase [Sphingobacterium sp. 21] |
| Swissprot | tr|O81301|PME40_ARATH | 5.00E-160 | Pectinesterase 40 (Precursor) |
| trEMBL | tr|V7BH80|V7BH80_PHAVU | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00237 | 198334 | 202608 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000237s00014421.1 | PF04043.10 | PMEI | 25 | 174 | 3.40E-24 |
| Glyur000237s00014421.1 | PF01095.14 | Pectinesterase | 217 | 480 | 4.00E-116 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.282 |
| SRR1783600 | control | 0.275 |
| SRR1783602 | moderate drought stress | 0.207 |
| SRR1811619 | moderate drought stress | 0.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.232 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.195 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.187 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.782 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.822 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.621 |
| SRR2967015 | Control (Tissue:root) | 2.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.463 |
| SRR9715740 | Leave | 0.842 |
| SRR9715741 | Leave | 3.334 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.236 |
| SRR9715743 | Root | 0.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.290 |
| SRR8400027 | Control-Root | 2.892 |