Gene detail information of Glyur000237s00014422.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G02330.15.00E-178Plant invertase/pectin methylesterase inhibitor superfamily
NRKEH24403.10pectinesterase/pectinesterase inhibitor [Medicago truncatula]
COGYP_006407803.12.00E-47pectin methylesterase [Belliella baltica DSM 15883]
Swissprottr|Q8RXK7|PME41_ARATH0Pectinesterase 41 (Precursor)
trEMBLtr|A0A072U5L0|A0A072U5L0_MEDTR0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00237207880230931+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000237s00014422.1PF04043.10PMEI371915.80E-18
Glyur000237s00014422.1PF01095.14Pectinesterase2635561.50E-130
Glyur000237s00014422.1PF04043.10PMEI5827108.80E-18
Glyur000237s00014422.1PF01095.14Pectinesterase7609723.00E-104
Glyur000237s00014422.1PF04043.10PMEI100711521.40E-23
Glyur000237s00014422.1PF01095.14Pectinesterase121513001.90E-25
Glyur000237s00014422.1PF01095.14Pectinesterase130714841.70E-84


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.550
SRR1783600control2.593
SRR1783602moderate drought stress2.069
SRR1811619moderate drought stress2.059

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.879
DRR006520Root Summer glycyrrhizin high producing strain5.747
DRR006521Root Winter glycyrrhizin high producing strain0.677
DRR006522Root Winter glycyrrhizin high producing strain0.755
DRR006523Root Summer glycyrrhizin low producing strain4.700
DRR006524Root Summer glycyrrhizin low producing strain4.579
DRR006525Leaf Summer glycyrrhizin high producing strain0.549
DRR006526Leaf Summer glycyrrhizin high producing strain0.541

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.961
SRR2868004Drought Stress(Tissue:root)28.926
SRR2967015Control (Tissue:root)26.448

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.187
SRR9715740Leave1.646
SRR9715741Leave6.270
SRR9715739Root21.761
SRR9715742Root28.088
SRR9715743Root23.836

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h190.254
SRR8749028MeJA induced 9h195.075
SRR8749029MeJA induced 9h104.315
SRR8749030Uninduced25.299
SRR8749031Uninduced3.377
SRR8749032Uninduced12.101

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.688
SRR8400027Control-Root5.641

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved