Gene detail information of Glyur000237s00014425.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G62690.11.00E-21AtL5
NRKEH24399.11.73E-76anaphase-promoting complex subunit 11 RING-H2 finger protein [Medicago truncatula]
Swissprottr|Q9LZJ6|ATL5_ARATH9.00E-32RING-H2 finger protein ATL5
trEMBLtr|A0A072U3V2|A0A072U3V2_MEDTR6.00E-77Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313|EMBL:KEH24399.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00237234987235613-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000237s00014425.1PF13639.1zf-RING_2911351.00E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.810
SRR1783600control27.969
SRR1783602moderate drought stress61.148
SRR1811619moderate drought stress59.200

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.239
DRR006520Root Summer glycyrrhizin high producing strain30.916
DRR006521Root Winter glycyrrhizin high producing strain2.308
DRR006522Root Winter glycyrrhizin high producing strain2.493
DRR006523Root Summer glycyrrhizin low producing strain19.558
DRR006524Root Summer glycyrrhizin low producing strain18.432
DRR006525Leaf Summer glycyrrhizin high producing strain13.008
DRR006526Leaf Summer glycyrrhizin high producing strain13.615

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.043
SRR2868004Drought Stress(Tissue:root)12.355
SRR2967015Control (Tissue:root)28.383

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.152
SRR9715740Leave1.768
SRR9715741Leave4.967
SRR9715739Root26.971
SRR9715742Root13.924
SRR9715743Root16.734

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.798
SRR8749028MeJA induced 9h3.290
SRR8749029MeJA induced 9h3.070
SRR8749030Uninduced1.646
SRR8749031Uninduced0.880
SRR8749032Uninduced1.958

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.015
SRR8400027Control-Root9.218

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved