Gene detail information of Glyur000238s00016784.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01160.1 | 5.00E-79 | RING/U-box superfamily protein |
| NR | XP_003529137.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase Hakai-like isoform X1 [Glycine max] |
| trEMBL | tr|I1KK98|I1KK98_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G17390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00238 | 88795 | 94235 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.047 |
| SRR1783600 | control | 27.390 |
| SRR1783602 | moderate drought stress | 34.001 |
| SRR1811619 | moderate drought stress | 34.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.690 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.535 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 44.412 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.777 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.855 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.937 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.675 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 29.819 |
| SRR2868004 | Drought Stress(Tissue:root) | 35.407 |
| SRR2967015 | Control (Tissue:root) | 36.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.997 |
| SRR9715740 | Leave | 15.057 |
| SRR9715741 | Leave | 19.617 |
| SRR9715739 | Root | 23.488 |
| SRR9715742 | Root | 26.577 |
| SRR9715743 | Root | 24.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.252 |
| SRR8749028 | MeJA induced 9h | 27.173 |
| SRR8749029 | MeJA induced 9h | 26.038 |
| SRR8749030 | Uninduced | 17.048 |
| SRR8749031 | Uninduced | 21.510 |
| SRR8749032 | Uninduced | 15.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.701 |
| SRR8400027 | Control-Root | 26.240 |