Gene detail information of Glyur000238s00016788.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G38050.19.00E-863-oxo-5-alpha-steroid 4-dehydrogenase family protein
NRXP_004514547.15.68E-152PREDICTED: steroid 5-alpha-reductase DET2-like [Cicer arietinum]
Swissprottr|Q2QDF6|DET2_GOSHI8.00E-122Steroid 5-alpha-reductase DET2
trEMBLtr|Q672H5|Q672H5_PEA3.00E-1485-alpha-reductase {ECO:0000313|EMBL:AAT76665.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00238121264122049-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09591DET2 EC:1.3.1.22 Brassinosteroid biosynthesis map00905


Gene Ontology

biological_process

GO:0006629  lipid metabolic process

GO:0008202  steroid metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005737  cytoplasm

GO:0016020  membrane

GO:0016021  integral component of membrane


molecular_function

GO:0003865  3-oxo-5-alpha-steroid 4-dehydrogenase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000238s00016788.1PF02544.11Steroid_dh1122613.80E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.589
SRR1783600control9.671
SRR1783602moderate drought stress9.020
SRR1811619moderate drought stress8.381

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.646
DRR006520Root Summer glycyrrhizin high producing strain6.743
DRR006521Root Winter glycyrrhizin high producing strain4.263
DRR006522Root Winter glycyrrhizin high producing strain4.311
DRR006523Root Summer glycyrrhizin low producing strain8.660
DRR006524Root Summer glycyrrhizin low producing strain8.863
DRR006525Leaf Summer glycyrrhizin high producing strain2.132
DRR006526Leaf Summer glycyrrhizin high producing strain2.595

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.186
SRR2868004Drought Stress(Tissue:root)15.653
SRR2967015Control (Tissue:root)17.710

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.775
SRR9715740Leave2.874
SRR9715741Leave4.735
SRR9715739Root12.317
SRR9715742Root7.317
SRR9715743Root8.914

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.682
SRR8749028MeJA induced 9h4.587
SRR8749029MeJA induced 9h2.473
SRR8749030Uninduced1.628
SRR8749031Uninduced0.325
SRR8749032Uninduced0.487

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.956
SRR8400027Control-Root10.827

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved