Gene detail information of Glyur000238s00016789.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G01290.1 | 0 | mRNA capping enzyme family protein |
NR | XP_006602636.1 | 0 | PREDICTED: mRNA-capping enzyme-like isoform X1 [Glycine max] |
trEMBL | tr|K7MTE7|K7MTE7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G42375.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00238 | 132303 | 143970 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K13917 | RNGTT | EC:2.7.7.50 3.6.1.- | mRNA surveillance pathway | map03015 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000238s00016789.1 | PF00782.15 | DSPc | 140 | 259 | 2.40E-17 |
Glyur000238s00016789.1 | PF01331.14 | mRNA_cap_enzyme | 359 | 537 | 1.60E-63 |
Glyur000238s00016789.1 | PF03919.10 | mRNA_cap_C | 693 | 757 | 4.10E-19 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 10.402 |
SRR1783600 | control | 10.119 |
SRR1783602 | moderate drought stress | 14.817 |
SRR1811619 | moderate drought stress | 14.856 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 15.198 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 15.179 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 15.785 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 15.402 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 16.975 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 16.754 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.898 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.035 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 17.739 |
SRR2868004 | Drought Stress(Tissue:root) | 22.150 |
SRR2967015 | Control (Tissue:root) | 25.501 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 18.293 |
SRR9715740 | Leave | 21.625 |
SRR9715741 | Leave | 19.703 |
SRR9715739 | Root | 2.406 |
SRR9715742 | Root | 10.360 |
SRR9715743 | Root | 8.907 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 8.308 |
SRR8749028 | MeJA induced 9h | 9.965 |
SRR8749029 | MeJA induced 9h | 7.529 |
SRR8749030 | Uninduced | 7.912 |
SRR8749031 | Uninduced | 14.870 |
SRR8749032 | Uninduced | 9.520 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 21.124 |
SRR8400027 | Control-Root | 21.017 |