Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000238s00016793.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09080.1	3.00E-130	Transducin/WD40 repeat-like superfamily protein
NR	XP_004514492.1	0	PREDICTED: WD repeat-containing protein 62-like [Cicer arietinum]
COG	YP_004050921.1	4.00E-21	wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
Swissprot	tr\|A8ILK1\|CFA52_CHLRE	3.00E-09	Cilia- and flagella-associated protein 52 {ECO:0000305}
trEMBL	tr\|K7L1P9\|K7L1P9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G17465.1}

Sequence

Transcript Sequence

>Glyur000238s00016793.1
ATGAAGCCCACTCGCAGATTCAACAAACCCGATACTGTATCGAAGCTGGTTTTGGAGGAGGTAATTGGACTGACAACGAAAAATGGCAATGGGTTAGCTTCAAATACCTCGAGTTCGAAATGTGCTTATTTGGCAGGTTCTGTGGTGGTGATTTTTGATGTGAATCTGGGTACTCAGTCGCACCTCATGGTGTCTAATAGATTGCCAAAGCCTTTGAGTTGTGTAGCTTTGTCACGAGATGGGCGCTTTGTTGCGGCTGGAGAGGCAGGAAACCAGTCCTCAGTACTAGTTTGGGATTCTTCTACTTTGTCCGTTGTCTCTGAATTGAAGGGTCATCTATATGGAGTTGCATGCATCTGTTTCTCACCGAATGGTAAACACCTGGTATCTGTTGGGAGATATATTTTCCTTTGGGACTGGCAGAGTGGTGAGCTGATGACAAAGCTTCAAGCAACTTCATCTTGTTCTACTGTCTCAAGTGTTAGCTTCTCGTCANATGCAAAATTTATTGTAACTGCTGGGAAAAAGCACTTGAAATTCTGGATACTTGGATCATCTAGAAGGACTCAACAAAATGGAGGGACGAGAAGGTCCAGCAGGATGACATCATTATCAATACATGAAAAGCTTGCCAATCTTTCGATTCATAAAAAAAGTTCTTTTACGTCTATTGCTTCTTCTGTGTGGAGCAGTAGCAGCAATGATAATTGTAAACAAGCTGGTGATTTCTTTCCCATATATGCATTGACTGATTCAGGCATTTTATACCTTATTCATTCTGGGTTGTCAGTTAAAAAGTCAGTGATCTTGAAGGTTCGAAAAGCTTTTGCATTATCAACATCAGGAAAGCTGATTGCTTGTGCATGCAATAATGGAACAGTCCAACTATTTACCCCCATGTCTCTAGAGTACGTGGGCAGTATTTTATATTCAAAGGCCAAAAAAATTTATGAAGAAAACAACACTGTTGACAATGCCATAGTTCCTGAACAGGATTTCCAACAGTTGCCTGCTCTGCCTGATGCAGTNGCGTGCCAGTTTTCAGCCTTAGAGAAGCTTGTGGTTATTTATGGAGATCATAGTCTCTACATCTGGGATATCCATGATGCGACAAAGTGTTTTGTGCTAGTTTCACATTCCTCATGCATATGGGATATCAGGAATCTATGTTGTGAAAACATGCATGATCCATCCCTTGCATGCACTGCAAGAGGTTGTTCGGGGGGAATTTCTTTTGCAACATGCTCTNCTGATGGTACAATTAGGCTATGGGATATTTCTTTGCAATCTGATTTATCAAAAGATGTTGAAGAGCTGAAGACTGAACTGTTGGTTTCTTCATGTTTAGTTAAGGCAGATCTTACCAGTCAAGAATTTAGGTCGCTTGCTGTTAGTTCAGATGGAAAGTATCTTGCTGCTGGTGATAGCAAAGGAAACCTTCATATATACAACCTTCAAACATCGGATTACACATGTCTTCAGGGTGCTCATGATGCAGAAATTCTTACATTAAGCTTTAACTTGTCCACCCAAGACATATCTGGGGAAATTGAAAAAAGCAGTTACTTTCTTGCCTCAGGGGGACGAGATTGTATAATCCATCTCTATGATGTTAAAAGCATTGATGATCATTCGGCTGCTGTGACTTCTATCAAAATTAGCAGCGACAGTTGCAGGATCCTCAGTTGTGGTGCGGATAGTTTCCTGGTGCTCCATGATGTAGTGATAGAAGATAATGGTTATAAAATTTTTCAGCGACACCGTCAAAAGGCTTCACAATGTGGAACCGTTTATGACATGGCTGTGGATCTGACATGTGAGAATGTTNTCACAGTTGGGCAGGATAAGAAGATAAAGACGTTTGACATGGCTGCTCGGAGACTAATTAGGTCCTACAATCATGATAAAAGTTTTGGAGAACCTATAAAGGTTATAATGGATCCGAGTTGCACCTATGTGGTCTGTTCATTCTCTAACAAGTCCATCTGCATTTATGACTTTATGACTGGAGAGATGGTTGCAAAGGCCACGGGGCATGCTGAAATTGTTACTGGTGTAGATGGTGATGGTTGTGTTTTTGTATGGAAATTGCCTACCCCGCTGTCTTCTAAAATATTGGAGAGAATAATGGTGAAAAGTAATCCATTGCCTTCAAGAAGTTCAGGTCAACATCCTCCTTGTCTATCATTTTGCAAAGAGGAGTGTCAGTACTTCATGATCAATCCTAAGGAAGCCTGTTCATTGAGGAACAACAGCCAAAGTTGGGATGGAGTGCTTCATCCAAAAAGTAGTCACAGAGAGGCTTCATCTTTTAAATTTAGTGTTTCAAGACTTCCCAAATGGGCACAAGCGAAAGTGACCAGNTGCAGCAGGAATCTTAATTACACTTCATCAGAGGCATATTCTCCTTCATCCCCAGAAGTTCAAATACCATCCGATCATGCTTCTTTGTNGCCAGAGACCGTGAACTCTCAGTGTTCTTCAAGGCCTGGAAGTACTTTCAGCAACATTGCTTTGGACAACCATTGGCTCTCTGTTTACACTGTTTGTGTGGATGCACTTTCCTCCCCAGAGATGCANAATGTACTTGACACAAAGTTTCCAAAGATTCCCTCGAGTTTAAGTCACCGGAGAGAGATGATCTGGTCGCCGGAGAGAGAGGAGGTGGTCGCCAGAGAGAGAGGAGCTGGTCGCTGGAGAGAGAGGAGCAAAGCAGAGAGCACGTTGCAGCAAAGCAGAAAGCAGAAAGCAGGTTGCACCTCGCCGGAAAAGACAAACAGACGGCCAGAGAAGGACAGCGAACTGTCCCGGAGATGGATGGAGCAGTCGCCGGCGATGAAGGGTCTGAGAAAGAGAGAGCTTCACGAAGGGGGACAAGATAGGGCTGTGATCAGTAAGGACCAGAACTCCTTTGGCTTTAGTAGCCTTAGAAAGAATGAAAAGATGGGTCTTGTTTTAGACCAGCATGTTGGTTGCTACGTTAATGATTTTTCTTGGTGTTCTGAACAAGTTTCNGATGGAAAAGCAGAGCAGTTGCATTCAGATGAATCTGGAGATGTGTCAAAAACAGCTCTTGAAGATAACTTGGACAGTCTGTGCTGTGNAGAAGACAGTGATATCTTTAAGCGACATTTTGGCAGCTTATCAAATACCCACAAGATAGAGTCAAGGAATTCATTAGTTAGAAGGTTTTCAGCAAGGTATCTTGTGCAATGGGATTACCCAGGGGACTGCAAGAAATTATTTAGCAGTCCTGTCAGGAATATGACCGATAGCAAGAGCTCTGAGGATGAAGCTGCAACTCATATTATATCAGAAAACAGATCCTTGCAGGTGATGGAAATTGAGGAAGACCTCAAGAATTCAGCACTAGGTTTAGCAGATTCAAGACGTGAATTAATCAGATGCTCTGTCAAAGAAAATTCAGATGACAATCAGCTGGGGCTAGACAGGGATCAAAAGGAAGGTGGTTGTGAAGGGAGTGAACTGCAAGAAGCCATAACTGCATGCAAGAAAGCATTCGGTAGCTTGGATGCAGCAGCTGAGAATGCNGTGCAGTTGATTTCAAAATTAGAAAAGGATTACGGGGAAGAGGTTTCGAGAGGAGCTGGAGCTCAATTTCTAATTGAGGCAGCTGAGCTACTCCCACGAATTGTTGAGAAACTGGGGCTAGACAGGGATCAAAAGGAAGGTGGTTGTGAAGGGAGTGAACTGCAAGAAGCCATAACTGCATGCAAGAAAGCATTCGGTAGCTTGGATGCAGCAGCTGAGAATGCGGTGCAGTTGATTTCAAAATTAGAAAAGGATTACGGGGAAGAGGTTTCGAGAGGAGCTGGAGCTCAATTTCTAATTGAGGCAGCTGAGCTACTCCCACGAATTGTTGAGAAAGTTAATACTGTTGCTAGATTGGTTCAA

Protein Sequence

>Glyur000238s00016793.1
MKPTRRFNKPDTVSKLVLEEVIGLTTKNGNGLASNTSSSKCAYLAGSVVVIFDVNLGTQSHLMVSNRLPKPLSCVALSRDGRFVAAGEAGNQSSVLVWDSSTLSVVSELKGHLYGVACICFSPNGKHLVSVGRYIFLWDWQSGELMTKLQATSSCSTVSSVSFSSXAKFIVTAGKKHLKFWILGSSRRTQQNGGTRRSSRMTSLSIHEKLANLSIHKKSSFTSIASSVWSSSSNDNCKQAGDFFPIYALTDSGILYLIHSGLSVKKSVILKVRKAFALSTSGKLIACACNNGTVQLFTPMSLEYVGSILYSKAKKIYEENNTVDNAIVPEQDFQQLPALPDAVACQFSALEKLVVIYGDHSLYIWDIHDATKCFVLVSHSSCIWDIRNLCCENMHDPSLACTARGCSGGISFATCSXDGTIRLWDISLQSDLSKDVEELKTELLVSSCLVKADLTSQEFRSLAVSSDGKYLAAGDSKGNLHIYNLQTSDYTCLQGAHDAEILTLSFNLSTQDISGEIEKSSYFLASGGRDCIIHLYDVKSIDDHSAAVTSIKISSDSCRILSCGADSFLVLHDVVIEDNGYKIFQRHRQKASQCGTVYDMAVDLTCENVXTVGQDKKIKTFDMAARRLIRSYNHDKSFGEPIKVIMDPSCTYVVCSFSNKSICIYDFMTGEMVAKATGHAEIVTGVDGDGCVFVWKLPTPLSSKILERIMVKSNPLPSRSSGQHPPCLSFCKEECQYFMINPKEACSLRNNSQSWDGVLHPKSSHREASSFKFSVSRLPKWAQAKVTXCSRNLNYTSSEAYSPSSPEVQIPSDHASLXPETVNSQCSSRPGSTFSNIALDNHWLSVYTVCVDALSSPEMXNVLDTKFPKIPSSLSHRREMIWSPEREEVVARERGAGRWRERSKAESTLQQSRKQKAGCTSPEKTNRRPEKDSELSRRWMEQSPAMKGLRKRELHEGGQDRAVISKDQNSFGFSSLRKNEKMGLVLDQHVGCYVNDFSWCSEQVSDGKAEQLHSDESGDVSKTALEDNLDSLCCXEDSDIFKRHFGSLSNTHKIESRNSLVRRFSARYLVQWDYPGDCKKLFSSPVRNMTDSKSSEDEAATHIISENRSLQVMEIEEDLKNSALGLADSRRELIRCSVKENSDDNQLGLDRDQKEGGCEGSELQEAITACKKAFGSLDAAAENAVQLISKLEKDYGEEVSRGAGAQFLIEAAELLPRIVEKLGLDRDQKEGGCEGSELQEAITACKKAFGSLDAAAENAVQLISKLEKDYGEEVSRGAGAQFLIEAAELLPRIVEKVNTVARLVQ

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00238	161170	180278	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000238s00016793.1	PF00400.27	WD40	105	139	0.00011
Glyur000238s00016793.1	PF00400.27	WD40	410	425	0.0084
Glyur000238s00016793.1	PF00400.27	WD40	495	537	0.0066
Glyur000238s00016793.1	PF00400.27	WD40	540	569	0.0012

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.671
SRR1783600	control	0.699
SRR1783602	moderate drought stress	0.879
SRR1811619	moderate drought stress	0.969

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.709
DRR006520	Root Summer glycyrrhizin high producing strain	0.563
DRR006521	Root Winter glycyrrhizin high producing strain	0.251
DRR006522	Root Winter glycyrrhizin high producing strain	0.166
DRR006523	Root Summer glycyrrhizin low producing strain	0.258
DRR006524	Root Summer glycyrrhizin low producing strain	0.342
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.340
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.399

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.100
SRR2868004	Drought Stress(Tissue:root)	1.459
SRR2967015	Control (Tissue:root)	1.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.660
SRR9715740	Leave	0.097
SRR9715741	Leave	0.365
SRR9715739	Root	0.048
SRR9715742	Root	0.387
SRR9715743	Root	0.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.016
SRR8749028	MeJA induced 9h	1.510
SRR8749029	MeJA induced 9h	0.754
SRR8749030	Uninduced	0.345
SRR8749031	Uninduced	0.130
SRR8749032	Uninduced	0.253

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.110
SRR8400027	Control-Root	2.263