Gene detail information of Glyur000239s00017890.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G68890.10magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases
NRKEH20210.10phylloquinone biosynthesis protein [Medicago truncatula]
COGYP_005067649.12.00E-102menaquinone biosynthesis protein MenD [Arthrospira platensis NIES-39]
Swissprottr|Q15KI9|PHYLO_ARATH02-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (Precursor)
trEMBLtr|A0A072U318|A0A072U318_MEDTR0Phylloquinone biosynthesis protein {ECO:0000313|EMBL:KEH20210.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0023981130102693+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14759PHYLLO EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113 Ubiquinone and other terpenoid-quinone biosynthesis map00130


Gene Ontology

biological_process

GO:0009063  cellular amino acid catabolic process

GO:0009234  menaquinone biosynthetic process


molecular_function

GO:0030976  thiamine pyrophosphate binding

GO:0070204  2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000239s00017890.1PF02776.13TPP_enzyme_N3415072.50E-28
Glyur000239s00017890.1PF01188.16MR_MLE113011954.10E-09
Glyur000239s00017890.1PF12697.2Abhydrolase_6137816283.60E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.066
SRR1783600control1.067
SRR1783602moderate drought stress1.481
SRR1811619moderate drought stress1.443

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.593
DRR006520Root Summer glycyrrhizin high producing strain0.655
DRR006521Root Winter glycyrrhizin high producing strain1.124
DRR006522Root Winter glycyrrhizin high producing strain1.004
DRR006523Root Summer glycyrrhizin low producing strain1.899
DRR006524Root Summer glycyrrhizin low producing strain1.909
DRR006525Leaf Summer glycyrrhizin high producing strain3.855
DRR006526Leaf Summer glycyrrhizin high producing strain3.910

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.775
SRR2868004Drought Stress(Tissue:root)6.434
SRR2967015Control (Tissue:root)7.281

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.716
SRR9715740Leave5.395
SRR9715741Leave3.652
SRR9715739Root0.136
SRR9715742Root1.009
SRR9715743Root0.923

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.118
SRR8749028MeJA induced 9h4.907
SRR8749029MeJA induced 9h1.457
SRR8749030Uninduced0.806
SRR8749031Uninduced0.330
SRR8749032Uninduced0.959

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.444
SRR8400027Control-Root9.231

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved