Gene detail information of Glyur000239s00017901.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23380.2 | 1.00E-47 | KNOTTED1-like homeobox gene 6 |
| NR | KHN42527.1 | 1.13E-63 | Homeobox protein knotted-1-like 6 [Glycine soja] |
| Swissprot | tr|Q84JS6|KNAT6_ARATH | 2.00E-57 | Homeobox protein knotted-1-like 6 |
| trEMBL | tr|I1KXC9|I1KXC9_SOYBN | 4.00E-64 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G39170.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00239 | 192973 | 193947 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000239s00017901.1 | PF03789.8 | ELK | 29 | 50 | 6.00E-08 |
| Glyur000239s00017901.1 | PF05920.6 | Homeobox_KN | 69 | 108 | 1.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.008 |
| SRR1811619 | moderate drought stress | 0.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.159 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.800 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.035 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.544 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.303 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.518 |
| SRR2967015 | Control (Tissue:root) | 5.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.055 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.987 |
| SRR9715743 | Root | 2.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.938 |
| SRR8749028 | MeJA induced 9h | 15.736 |
| SRR8749029 | MeJA induced 9h | 44.907 |
| SRR8749030 | Uninduced | 17.900 |
| SRR8749031 | Uninduced | 9.608 |
| SRR8749032 | Uninduced | 20.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.287 |
| SRR8400027 | Control-Root | 0.580 |