Gene detail information of Glyur000240s00016373.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G60080.11.00E-14RING/U-box superfamily protein
NRXP_004488573.12.03E-99PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum]
Swissprottr|Q9SPL2|CIP8_ARATH3.00E-15E3 ubiquitin-protein ligase CIP8
trEMBLtr|V7BT05|V7BT05_PHAVU4.00E-83Uncharacterized protein {ECO:0000313|EMBL:ESW21109.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002404927149981+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000240s00016373.1PF14369.1zf-RING_317491.50E-12
Glyur000240s00016373.1PF13639.1zf-RING_21101511.00E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.592
SRR1783600control33.731
SRR1783602moderate drought stress28.653
SRR1811619moderate drought stress29.256

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.502
DRR006520Root Summer glycyrrhizin high producing strain25.637
DRR006521Root Winter glycyrrhizin high producing strain10.571
DRR006522Root Winter glycyrrhizin high producing strain9.806
DRR006523Root Summer glycyrrhizin low producing strain25.308
DRR006524Root Summer glycyrrhizin low producing strain25.153
DRR006525Leaf Summer glycyrrhizin high producing strain26.591
DRR006526Leaf Summer glycyrrhizin high producing strain25.958

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.041
SRR2868004Drought Stress(Tissue:root)50.106
SRR2967015Control (Tissue:root)56.552

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.221
SRR9715740Leave17.773
SRR9715741Leave18.989
SRR9715739Root31.364
SRR9715742Root32.253
SRR9715743Root29.176

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.531
SRR8749028MeJA induced 9h35.581
SRR8749029MeJA induced 9h24.880
SRR8749030Uninduced31.574
SRR8749031Uninduced14.448
SRR8749032Uninduced21.800

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.819
SRR8400027Control-Root33.581

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved