Gene detail information of Glyur000240s00016377.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44350.10Citrate synthase family protein
NRKHN49052.10Citrate synthase, mitochondrial [Glycine soja]
COGYP_004990689.14.00E-161citrate (Si)-synthase [Owenweeksia hongkongensis DSM 17368]
Swissprottr|P49298|CISY_CITMA0Citrate synthase, mitochondrial (Precursor)
trEMBLtr|V7BVQ3|V7BVQ3_PHAVU0Citrate synthase {ECO:0000256|RuleBase:RU000441}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002407540983179+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01647CS, gltA EC:2.3.3.1 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Glyoxylate and dicarboxylate metabolismmap00630


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0044262  cellular carbohydrate metabolic process


molecular_function

GO:0046912  transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000240s00016377.1PF00285.16Citrate_synt1483535.60E-43
Glyur000240s00016377.1PF00285.16Citrate_synt3514971.40E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control61.638
SRR1783600control62.570
SRR1783602moderate drought stress49.499
SRR1811619moderate drought stress48.685

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain57.478
DRR006520Root Summer glycyrrhizin high producing strain56.637
DRR006521Root Winter glycyrrhizin high producing strain62.363
DRR006522Root Winter glycyrrhizin high producing strain61.337
DRR006523Root Summer glycyrrhizin low producing strain46.465
DRR006524Root Summer glycyrrhizin low producing strain45.015
DRR006525Leaf Summer glycyrrhizin high producing strain70.037
DRR006526Leaf Summer glycyrrhizin high producing strain69.173

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)152.404
SRR2868004Drought Stress(Tissue:root)136.390
SRR2967015Control (Tissue:root)112.191

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave117.679
SRR9715740Leave84.260
SRR9715741Leave126.559
SRR9715739Root34.660
SRR9715742Root76.598
SRR9715743Root67.737

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h96.842
SRR8749028MeJA induced 9h152.390
SRR8749029MeJA induced 9h118.120
SRR8749030Uninduced145.992
SRR8749031Uninduced164.184
SRR8749032Uninduced97.607

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root116.764
SRR8400027Control-Root101.755

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved