Gene detail information of Glyur000242s00021042.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13130.1 | 1.00E-145 | Cellulase (glycosyl hydrolase family 5) protein |
| NR | XP_003539156.1 | 0 | PREDICTED: uncharacterized protein LOC100816102 [Glycine max] |
| COG | YP_003952726.1 | 1.00E-27 | cellulase [Stigmatella aurantiaca DW4/3-1] |
| trEMBL | tr|I1LKM8|I1LKM8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G18350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00242 | 1207 | 9212 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH5 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000242s00021042.1 | PF00150.13 | Cellulase | 88 | 350 | 3.60E-16 |
| Glyur000242s00021042.1 | PF00652.17 | Ricin_B_lectin | 384 | 480 | 1.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.427 |
| SRR1783600 | control | 6.271 |
| SRR1783602 | moderate drought stress | 2.548 |
| SRR1811619 | moderate drought stress | 2.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.791 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.579 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.416 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.397 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.684 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.544 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.402 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.995 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.501 |
| SRR2967015 | Control (Tissue:root) | 1.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.353 |
| SRR9715740 | Leave | 0.097 |
| SRR9715741 | Leave | 0.321 |
| SRR9715739 | Root | 1.069 |
| SRR9715742 | Root | 3.198 |
| SRR9715743 | Root | 3.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.032 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.551 |
| SRR8400027 | Control-Root | 8.084 |