Gene detail information of Glyur000242s00021046.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G28345.10ABC transporter family protein
NRXP_004502504.10PREDICTED: putative multidrug resistance protein-like [Cicer arietinum]
COGYP_629357.12.00E-96ABC transporter permease [Myxococcus xanthus DK 1622]
Swissprottr|Q6YUU5|MDR_ORYSJ0Putative multidrug resistance protein
trEMBLtr|G7J341|G7J341_MEDTR0Multidrug resistance-associated protein ABC domain protein {ECO:0000313|EMBL:AES72134.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002422155927907-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000242s00021046.1PF00664.18ABC_membrane382631.50E-36
Glyur000242s00021046.1PF00005.22ABC_tran3384648.60E-30
Glyur000242s00021046.1PF00664.18ABC_membrane6619322.30E-36
Glyur000242s00021046.1PF00005.22ABC_tran100311491.40E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.263
SRR1783600control0.286
SRR1783602moderate drought stress0.248
SRR1811619moderate drought stress0.231

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.225
DRR006520Root Summer glycyrrhizin high producing strain0.226
DRR006521Root Winter glycyrrhizin high producing strain0.261
DRR006522Root Winter glycyrrhizin high producing strain0.220
DRR006523Root Summer glycyrrhizin low producing strain0.150
DRR006524Root Summer glycyrrhizin low producing strain0.104
DRR006525Leaf Summer glycyrrhizin high producing strain0.101
DRR006526Leaf Summer glycyrrhizin high producing strain0.100

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.022
SRR2868004Drought Stress(Tissue:root)0.060
SRR2967015Control (Tissue:root)0.042

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.057
SRR9715740Leave0.017
SRR9715741Leave0.000
SRR9715739Root0.000
SRR9715742Root0.065
SRR9715743Root0.044

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.159
SRR8749028MeJA induced 9h0.105
SRR8749029MeJA induced 9h0.056
SRR8749030Uninduced0.065
SRR8749031Uninduced0.122
SRR8749032Uninduced0.064

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.120
SRR8400027Control-Root0.193

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved