Gene detail information of Glyur000243s00013121.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G79790.12.00E-80Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NRAFK41397.12.29E-142unknown [Lotus japonicus]
COGNP_923663.12.00E-40hypothetical protein glr0717 [Gloeobacter violaceus PCC 7421]
trEMBLtr|I3SMA5|I3SMA5_LOTJA9.00E-143Uncharacterized protein {ECO:0000313|EMBL:AFK41397.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002433810440929+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K20860FHY1 EC:3.1.3.102 3.1.3.104 Riboflavin metabolism map00740


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0016787  hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000243s00013121.1PF13419.1HAD_2762486.40E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.331
SRR1783600control10.443
SRR1783602moderate drought stress9.340
SRR1811619moderate drought stress9.519

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.074
DRR006520Root Summer glycyrrhizin high producing strain8.168
DRR006521Root Winter glycyrrhizin high producing strain4.660
DRR006522Root Winter glycyrrhizin high producing strain4.572
DRR006523Root Summer glycyrrhizin low producing strain3.888
DRR006524Root Summer glycyrrhizin low producing strain3.755
DRR006525Leaf Summer glycyrrhizin high producing strain51.744
DRR006526Leaf Summer glycyrrhizin high producing strain51.864

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.287
SRR2868004Drought Stress(Tissue:root)18.062
SRR2967015Control (Tissue:root)8.481

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.941
SRR9715740Leave35.000
SRR9715741Leave32.675
SRR9715739Root1.498
SRR9715742Root1.719
SRR9715743Root1.936

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.142
SRR8749028MeJA induced 9h3.857
SRR8749029MeJA induced 9h2.161
SRR8749030Uninduced5.959
SRR8749031Uninduced4.124
SRR8749032Uninduced2.046

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.628
SRR8400027Control-Root15.310

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved