Gene detail information of Glyur000243s00013143.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61550.1 | 1.00E-48 | RING/U-box superfamily protein |
| NR | ABD28581.1 | 2.26E-89 | Zinc finger, RING-type [Medicago truncatula] |
| Swissprot | tr|Q9M313|ATL68_ARATH | 9.00E-76 | RING-H2 finger protein ATL68 |
| trEMBL | tr|Q2HV66|Q2HV66_MEDTR | 8.00E-90 | Zinc finger, RING-type {ECO:0000313|EMBL:ABD28581.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00243 | 173799 | 174347 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000243s00013143.1 | PF13639.1 | zf-RING_2 | 110 | 151 | 4.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.636 |
| SRR1783600 | control | 11.750 |
| SRR1783602 | moderate drought stress | 9.536 |
| SRR1811619 | moderate drought stress | 9.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.614 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.874 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.538 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.479 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.350 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.857 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.218 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.617 |
| SRR2868004 | Drought Stress(Tissue:root) | 39.215 |
| SRR2967015 | Control (Tissue:root) | 48.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.752 |
| SRR9715740 | Leave | 3.102 |
| SRR9715741 | Leave | 9.370 |
| SRR9715739 | Root | 17.562 |
| SRR9715742 | Root | 37.518 |
| SRR9715743 | Root | 27.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.215 |
| SRR8749028 | MeJA induced 9h | 0.658 |
| SRR8749029 | MeJA induced 9h | 0.938 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 40.375 |
| SRR8400027 | Control-Root | 27.202 |