Gene detail information of Glyur000244s00014800.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42070.1 | 4.00E-90 | nudix hydrolase homolog 23 |
| NR | XP_003554211.1 | 1.88E-159 | PREDICTED: nudix hydrolase 23, chloroplastic isoform X1 [Glycine max] |
| COG | YP_002604089.1 | 3.00E-48 | hypothetical protein HRM2_28370 [Desulfobacterium autotrophicum HRM2] |
| Swissprot | tr|P93740|NUD23_ARATH | 2.00E-112 | Nudix hydrolase 23, chloroplastic (Precursor) |
| trEMBL | tr|I1N989|I1N989_SOYBN | 7.00E-160 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G33010.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00244 | 50535 | 53589 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K18453 | NUDT23 | EC:3.6.1.13 3.6.1.18 | Purine metabolism | map00230 |
| Riboflavin metabolism | map00740 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000244s00014800.1 | PF14803.1 | Nudix_N_2 | 80 | 113 | 1.10E-13 |
| Glyur000244s00014800.1 | PF00293.23 | NUDIX | 119 | 224 | 3.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.866 |
| SRR1783600 | control | 7.991 |
| SRR1783602 | moderate drought stress | 10.728 |
| SRR1811619 | moderate drought stress | 10.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.601 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.590 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.453 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.616 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.998 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.817 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.431 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.058 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.137 |
| SRR2967015 | Control (Tissue:root) | 21.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.577 |
| SRR9715740 | Leave | 20.554 |
| SRR9715741 | Leave | 18.453 |
| SRR9715739 | Root | 2.201 |
| SRR9715742 | Root | 3.626 |
| SRR9715743 | Root | 4.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.019 |
| SRR8749028 | MeJA induced 9h | 6.032 |
| SRR8749029 | MeJA induced 9h | 4.444 |
| SRR8749030 | Uninduced | 4.533 |
| SRR8749031 | Uninduced | 6.082 |
| SRR8749032 | Uninduced | 6.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.551 |
| SRR8400027 | Control-Root | 16.335 |