Gene detail information of Glyur000244s00014828.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05310.1 | 3.00E-148 | Pectin lyase-like superfamily protein |
| NR | XP_004493561.1 | 0 | PREDICTED: probable pectinesterase 8-like [Cicer arietinum] |
| COG | YP_004641919.1 | 2.00E-58 | pectinesterase [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|O23038|PME8_ARATH | 0 | Probable pectinesterase 8 (Precursor) |
| trEMBL | tr|I1N963|I1N963_SOYBN | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00244 | 201744 | 204008 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000244s00014828.1 | PF01095.14 | Pectinesterase | 101 | 393 | 6.80E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.317 |
| SRR1783600 | control | 0.300 |
| SRR1783602 | moderate drought stress | 0.221 |
| SRR1811619 | moderate drought stress | 0.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.697 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.752 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.397 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.528 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.722 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.397 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.560 |
| SRR2967015 | Control (Tissue:root) | 4.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.110 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.054 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.385 |
| SRR9715743 | Root | 1.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.318 |
| SRR8749029 | MeJA induced 9h | 0.135 |
| SRR8749030 | Uninduced | 0.441 |
| SRR8749031 | Uninduced | 0.692 |
| SRR8749032 | Uninduced | 0.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.877 |
| SRR8400027 | Control-Root | 2.185 |