Gene detail information of Glyur000245s00014685.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G44446.10Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
NRAES59849.20chlorophyllide A oxygenase [Medicago truncatula]
COGNP_489047.12.00E-33hypothetical protein alr5007 [Nostoc sp. PCC 7120]
Swissprottr|Q9MBA1|CAO_ARATH0Chlorophyllide a oxygenase, chloroplastic (Precursor)
trEMBLtr|G7I8G8|G7I8G8_MEDTR0Chlorophyllide A oxygenase {ECO:0000313|EMBL:AES59849.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002457974584218-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13600CAO EC:1.14.13.122 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005506  iron ion binding

GO:0010277  chlorophyllide a oxygenase [overall] activity

GO:0016491  oxidoreductase activity

GO:0016705  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0051537  2 iron, 2 sulfur cluster binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000245s00014685.1PF00355.21Rieske2142981.50E-19
Glyur000245s00014685.1PF08417.7PaO4014997.80E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.105
SRR1783600control2.117
SRR1783602moderate drought stress3.906
SRR1811619moderate drought stress3.961

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.952
DRR006520Root Summer glycyrrhizin high producing strain0.858
DRR006521Root Winter glycyrrhizin high producing strain10.194
DRR006522Root Winter glycyrrhizin high producing strain9.692
DRR006523Root Summer glycyrrhizin low producing strain2.615
DRR006524Root Summer glycyrrhizin low producing strain2.709
DRR006525Leaf Summer glycyrrhizin high producing strain78.603
DRR006526Leaf Summer glycyrrhizin high producing strain78.438

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.085
SRR2868004Drought Stress(Tissue:root)24.683
SRR2967015Control (Tissue:root)16.084

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave83.936
SRR9715740Leave91.339
SRR9715741Leave92.516
SRR9715739Root6.748
SRR9715742Root13.841
SRR9715743Root10.474

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.171
SRR8749028MeJA induced 9h42.457
SRR8749029MeJA induced 9h26.470
SRR8749030Uninduced23.290
SRR8749031Uninduced19.605
SRR8749032Uninduced13.544

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.016
SRR8400027Control-Root6.878

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved