Gene detail information of Glyur000245s00014697.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G77590.10long chain acyl-CoA synthetase 9
NRXP_004498337.10PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_005846047.19.00E-80Long-chain acyl-CoA synthetase [Ignavibacterium album JCM 16511]
Swissprottr|Q9CAP8|LACS9_ARATH0Long chain acyl-CoA synthetase 9, chloroplastic
trEMBLtr|V7B5E3|V7B5E3_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW13044.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00245130646137285-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000245s00014697.1PF00501.23AMP-binding985627.50E-93


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.037
SRR1783600control5.988
SRR1783602moderate drought stress5.281
SRR1811619moderate drought stress5.187

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.899
DRR006520Root Summer glycyrrhizin high producing strain6.068
DRR006521Root Winter glycyrrhizin high producing strain12.379
DRR006522Root Winter glycyrrhizin high producing strain12.209
DRR006523Root Summer glycyrrhizin low producing strain2.219
DRR006524Root Summer glycyrrhizin low producing strain2.368
DRR006525Leaf Summer glycyrrhizin high producing strain13.210
DRR006526Leaf Summer glycyrrhizin high producing strain13.269

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.241
SRR2868004Drought Stress(Tissue:root)11.381
SRR2967015Control (Tissue:root)8.348

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.159
SRR9715740Leave24.155
SRR9715741Leave27.489
SRR9715739Root1.862
SRR9715742Root8.859
SRR9715743Root6.290

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.878
SRR8749028MeJA induced 9h4.248
SRR8749029MeJA induced 9h2.218
SRR8749030Uninduced1.997
SRR8749031Uninduced1.052
SRR8749032Uninduced1.037

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.668
SRR8400027Control-Root10.164

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved