Gene detail information of Glyur000246s00016965.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32990.1 | 1.00E-119 | glycosyl hydrolase 9B8 |
| NR | KHN38252.1 | 0 | Endoglucanase 11 [Glycine soja] |
| COG | YP_005439987.1 | 8.00E-78 | molybdopterin synthase sulfurylase MoeB [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| Swissprot | tr|O48766|GUN11_ARATH | 4.00E-150 | Endoglucanase 11 (Precursor) |
| trEMBL | tr|K7KBH6|K7KBH6_SOYBN | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00246 | 236 | 5446 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | ThiF |
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000246s00016965.1 | PF00759.14 | Glyco_hydro_9 | 36 | 293 | 2.90E-102 |
| Glyur000246s00016965.1 | PF00899.16 | ThiF | 325 | 456 | 3.90E-40 |
| Glyur000246s00016965.1 | PF05237.8 | MoeZ_MoeB | 462 | 546 | 9.60E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.458 |
| SRR1783600 | control | 12.077 |
| SRR1783602 | moderate drought stress | 4.866 |
| SRR1811619 | moderate drought stress | 4.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.375 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.717 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.597 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.443 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.144 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.015 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.034 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.872 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.068 |
| SRR2967015 | Control (Tissue:root) | 8.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.793 |
| SRR9715740 | Leave | 3.986 |
| SRR9715741 | Leave | 1.844 |
| SRR9715739 | Root | 6.639 |
| SRR9715742 | Root | 0.490 |
| SRR9715743 | Root | 6.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.014 |
| SRR8749028 | MeJA induced 9h | 3.284 |
| SRR8749029 | MeJA induced 9h | 2.714 |
| SRR8749030 | Uninduced | 0.754 |
| SRR8749031 | Uninduced | 0.201 |
| SRR8749032 | Uninduced | 0.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.054 |
| SRR8400027 | Control-Root | 9.181 |