Gene detail information of Glyur000246s00016970.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30050.1 | 3.00E-152 | transducin family protein / WD-40 repeat family protein |
| NR | XP_006586103.1 | 0 | PREDICTED: protein SEC13 homolog isoform X2 [Glycine max] |
| COG | YP_001864889.1 | 3.00E-22 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|O64740|SC13B_ARATH | 0 | Protein transport protein SEC13 homolog B {ECO:0000305} |
| trEMBL | tr|K7LA80|K7LA80_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G43390.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00246 | 33406 | 35579 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000246s00016970.1 | PF00400.27 | WD40 | 54 | 85 | 6.30E-06 |
| Glyur000246s00016970.1 | PF00400.27 | WD40 | 95 | 133 | 3.10E-10 |
| Glyur000246s00016970.1 | PF00400.27 | WD40 | 140 | 179 | 2.80E-08 |
| Glyur000246s00016970.1 | PF00400.27 | WD40 | 191 | 239 | 4.30E-08 |
| Glyur000246s00016970.1 | PF00400.27 | WD40 | 250 | 288 | 2.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.558 |
| SRR1783600 | control | 30.535 |
| SRR1783602 | moderate drought stress | 36.948 |
| SRR1811619 | moderate drought stress | 36.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.775 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.558 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.423 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 56.341 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.444 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 45.577 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.446 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 53.146 |
| SRR2868004 | Drought Stress(Tissue:root) | 57.154 |
| SRR2967015 | Control (Tissue:root) | 59.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 50.885 |
| SRR9715740 | Leave | 52.115 |
| SRR9715741 | Leave | 51.313 |
| SRR9715739 | Root | 69.038 |
| SRR9715742 | Root | 43.271 |
| SRR9715743 | Root | 47.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 64.367 |
| SRR8749028 | MeJA induced 9h | 43.344 |
| SRR8749029 | MeJA induced 9h | 45.335 |
| SRR8749030 | Uninduced | 34.009 |
| SRR8749031 | Uninduced | 24.900 |
| SRR8749032 | Uninduced | 61.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 39.982 |
| SRR8400027 | Control-Root | 43.054 |