Gene detail information of Glyur000246s00016998.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26770.1 | 5.00E-167 | Phosphatidate cytidylyltransferase family protein |
| NR | XP_003617642.1 | 0 | Phosphatidate cytidylyltransferase [Medicago truncatula] |
| COG | YP_004345481.1 | 3.00E-19 | phosphatidate cytidylyltransferase [Fluviicola taffensis DSM 16823] |
| Swissprot | tr|O04940|CDS1_SOLTU | 0 | Phosphatidate cytidylyltransferase |
| trEMBL | tr|G7K8P8|G7K8P8_MEDTR | 0 | Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00246 | 192440 | 195209 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00981 | E2.7.7.41, CDS1, CDS2, cdsA | EC:2.7.7.41 | Glycerophospholipid metabolism | map00564 |
| Phosphatidylinositol signaling system | map04070 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000246s00016998.1 | PF01148.15 | CTP_transf_1 | 48 | 350 | 5.20E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.048 |
| SRR1783600 | control | 0.075 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.626 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.561 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.059 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.101 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.110 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.099 |
| SRR2967015 | Control (Tissue:root) | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.091 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.079 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.134 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.114 |
| SRR8749030 | Uninduced | 0.065 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.113 |
| SRR8400027 | Control-Root | 0.087 |