Gene detail information of Glyur000247s00015487.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G27520.10Glycosyl hydrolase family 47 protein
NRXP_003549640.10PREDICTED: probable alpha-mannosidase I MNS5-like [Glycine max]
Swissprottr|Q9SXC9|MNS5_ARATH0Probable alpha-mannosidase I MNS5
trEMBLtr|I1MTK9|I1MTK9_SOYBN0alpha-1,2-Mannosidase {ECO:0000256|RuleBase:RU361193}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002471231817849-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH47


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0016020  membrane


molecular_function

GO:0004571  mannosyl-oligosaccharide 1,2-alpha-mannosidase activity

GO:0005509  calcium ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000247s00015487.1PF01532.15Glyco_hydro_47444898.30E-123


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.195
SRR1783600control6.684
SRR1783602moderate drought stress8.500
SRR1811619moderate drought stress8.318

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.363
DRR006520Root Summer glycyrrhizin high producing strain4.781
DRR006521Root Winter glycyrrhizin high producing strain9.303
DRR006522Root Winter glycyrrhizin high producing strain8.535
DRR006523Root Summer glycyrrhizin low producing strain5.828
DRR006524Root Summer glycyrrhizin low producing strain5.775
DRR006525Leaf Summer glycyrrhizin high producing strain8.144
DRR006526Leaf Summer glycyrrhizin high producing strain8.195

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.658
SRR2868004Drought Stress(Tissue:root)12.263
SRR2967015Control (Tissue:root)13.424

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.545
SRR9715740Leave12.554
SRR9715741Leave13.308
SRR9715739Root2.323
SRR9715742Root6.201
SRR9715743Root5.995

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.699
SRR8749028MeJA induced 9h12.916
SRR8749029MeJA induced 9h10.484
SRR8749030Uninduced22.319
SRR8749031Uninduced11.042
SRR8749032Uninduced11.489

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.212
SRR8400027Control-Root14.170

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved