Gene detail information of Glyur000247s00015488.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G47830.13.00E-90DNA glycosylase superfamily protein
NRXP_004508835.11.03E-170PREDICTED: protein ROS1-like [Cicer arietinum]
COGYP_001545170.17.00E-37DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon aurantiacus DSM 785]
Swissprottr|Q9SJQ6|ROS1_ARATH2.00E-15Protein ROS1
trEMBLtr|V7CB62|V7CB62_PHAVU2.00E-168Uncharacterized protein {ECO:0000313|EMBL:ESW27384.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002471929322286-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10773NTH EC:4.2.99.18 Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000247s00015488.1PF00730.20HhH-GPD922355.40E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.973
SRR1783600control9.328
SRR1783602moderate drought stress18.462
SRR1811619moderate drought stress18.679

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.993
DRR006520Root Summer glycyrrhizin high producing strain8.336
DRR006521Root Winter glycyrrhizin high producing strain9.296
DRR006522Root Winter glycyrrhizin high producing strain9.317
DRR006523Root Summer glycyrrhizin low producing strain12.835
DRR006524Root Summer glycyrrhizin low producing strain12.619
DRR006525Leaf Summer glycyrrhizin high producing strain5.982
DRR006526Leaf Summer glycyrrhizin high producing strain5.781

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.343
SRR2868004Drought Stress(Tissue:root)10.581
SRR2967015Control (Tissue:root)12.505

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.402
SRR9715740Leave7.933
SRR9715741Leave5.218
SRR9715739Root2.987
SRR9715742Root3.642
SRR9715743Root4.729

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.546
SRR8749028MeJA induced 9h4.795
SRR8749029MeJA induced 9h4.986
SRR8749030Uninduced0.812
SRR8749031Uninduced0.976
SRR8749032Uninduced2.285

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.122
SRR8400027Control-Root13.914

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved