Gene detail information of Glyur000247s00015492.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50120.1 | 5.00E-105 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003608925.1 | 0 | WD repeat-containing protein [Medicago truncatula] |
| COG | YP_002463148.1 | 4.00E-26 | NB-ARC domain-containing protein [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|Q9M3B4|RID3_ARATH | 1.00E-13 | Protein ROOT INITIATION DEFECTIVE 3 |
| trEMBL | tr|G7JNR9|G7JNR9_MEDTR | 0 | Myosin heavy chain kinase B-like protein {ECO:0000313|EMBL:AES91122.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00247 | 37818 | 39050 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000247s00015492.1 | PF00400.27 | WD40 | 97 | 130 | 0.0036 |
| Glyur000247s00015492.1 | PF00400.27 | WD40 | 176 | 210 | 6.80E-07 |
| Glyur000247s00015492.1 | PF00400.27 | WD40 | 221 | 253 | 6.10E-07 |
| Glyur000247s00015492.1 | PF00400.27 | WD40 | 266 | 298 | 1.30E-05 |
| Glyur000247s00015492.1 | PF00400.27 | WD40 | 315 | 347 | 6.30E-09 |
| Glyur000247s00015492.1 | PF00400.27 | WD40 | 358 | 404 | 1.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.362 |
| SRR1783600 | control | 0.370 |
| SRR1783602 | moderate drought stress | 9.666 |
| SRR1811619 | moderate drought stress | 9.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.263 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.179 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.600 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.965 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.539 |
| SRR2967015 | Control (Tissue:root) | 0.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.951 |
| SRR9715740 | Leave | 7.940 |
| SRR9715741 | Leave | 5.977 |
| SRR9715739 | Root | 0.805 |
| SRR9715742 | Root | 0.225 |
| SRR9715743 | Root | 0.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.471 |
| SRR8749028 | MeJA induced 9h | 6.668 |
| SRR8749029 | MeJA induced 9h | 7.163 |
| SRR8749030 | Uninduced | 1.607 |
| SRR8749031 | Uninduced | 0.561 |
| SRR8749032 | Uninduced | 1.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.667 |
| SRR8400027 | Control-Root | 1.378 |