Gene detail information of Glyur000247s00015496.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48160.2 | 2.00E-46 | DP-E2F-like 1 |
| NR | XP_004508820.1 | 9.09E-117 | PREDICTED: E2F transcription factor-like E2FE-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8LSZ4|E2FE_ARATH | 1.00E-54 | E2F transcription factor-like E2FE |
| trEMBL | tr|A0A072URB0|A0A072URB0_MEDTR | 1.00E-105 | E2F transcription factor-E2FE-like protein {ECO:0000313|EMBL:KEH31861.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00247 | 56689 | 57899 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000247s00015496.1 | PF02319.15 | E2F_TDP | 2 | 68 | 5.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.738 |
| SRR1783600 | control | 1.340 |
| SRR1783602 | moderate drought stress | 0.557 |
| SRR1811619 | moderate drought stress | 0.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.051 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.326 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.150 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.184 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.900 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.504 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.404 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.121 |
| SRR2967015 | Control (Tissue:root) | 4.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.315 |
| SRR9715740 | Leave | 0.129 |
| SRR9715741 | Leave | 0.659 |
| SRR9715739 | Root | 0.012 |
| SRR9715742 | Root | 1.213 |
| SRR9715743 | Root | 0.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.103 |
| SRR8749028 | MeJA induced 9h | 4.950 |
| SRR8749029 | MeJA induced 9h | 4.131 |
| SRR8749030 | Uninduced | 0.436 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.398 |
| SRR8400027 | Control-Root | 5.000 |