Gene detail information of Glyur000247s00015501.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62910.1 | 8.00E-50 | RING/U-box superfamily protein |
| NR | AFK46138.1 | 1.03E-148 | unknown [Medicago truncatula] |
| trEMBL | tr|I3T0U6|I3T0U6_MEDTR | 4.00E-149 | Uncharacterized protein {ECO:0000313|EMBL:AFK46138.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00247 | 81373 | 83133 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000247s00015501.1 | PF14570.1 | zf-RING_4 | 289 | 335 | 8.90E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.265 |
| SRR1783600 | control | 21.687 |
| SRR1783602 | moderate drought stress | 24.649 |
| SRR1811619 | moderate drought stress | 24.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.991 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.535 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.054 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.494 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.114 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.241 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.352 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.593 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.944 |
| SRR2967015 | Control (Tissue:root) | 21.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.366 |
| SRR9715740 | Leave | 28.858 |
| SRR9715741 | Leave | 29.331 |
| SRR9715739 | Root | 32.356 |
| SRR9715742 | Root | 24.804 |
| SRR9715743 | Root | 26.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.122 |
| SRR8749028 | MeJA induced 9h | 23.253 |
| SRR8749029 | MeJA induced 9h | 21.385 |
| SRR8749030 | Uninduced | 10.224 |
| SRR8749031 | Uninduced | 20.345 |
| SRR8749032 | Uninduced | 24.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.723 |
| SRR8400027 | Control-Root | 17.872 |