Gene detail information of Glyur000247s00015507.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74840.1 | 2.00E-49 | Homeodomain-like superfamily protein |
| NR | XP_007155372.1 | 2.57E-138 | hypothetical protein PHAVU_003G195700g [Phaseolus vulgaris] |
| Swissprot | tr|Q2V9B0|MY1R1_SOLTU | 2.00E-74 | Transcription factor MYB1R1 |
| trEMBL | tr|V7CEN4|V7CEN4_PHAVU | 1.00E-138 | Uncharacterized protein {ECO:0000313|EMBL:ESW27366.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00247 | 139663 | 142140 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
| EAR motif-containing Proteins | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000247s00015507.1 | PF00249.26 | Myb_DNA-binding | 90 | 134 | 1.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 250.818 |
| SRR1783600 | control | 250.567 |
| SRR1783602 | moderate drought stress | 332.995 |
| SRR1811619 | moderate drought stress | 331.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 147.801 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 146.346 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 119.368 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 115.452 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 151.559 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 151.605 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 281.793 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 280.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 152.602 |
| SRR2868004 | Drought Stress(Tissue:root) | 186.864 |
| SRR2967015 | Control (Tissue:root) | 197.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 307.007 |
| SRR9715740 | Leave | 435.994 |
| SRR9715741 | Leave | 362.932 |
| SRR9715739 | Root | 192.811 |
| SRR9715742 | Root | 214.766 |
| SRR9715743 | Root | 211.967 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 223.972 |
| SRR8749028 | MeJA induced 9h | 297.256 |
| SRR8749029 | MeJA induced 9h | 347.650 |
| SRR8749030 | Uninduced | 225.182 |
| SRR8749031 | Uninduced | 178.066 |
| SRR8749032 | Uninduced | 278.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 118.982 |
| SRR8400027 | Control-Root | 111.272 |