Gene detail information of Glyur000247s00015515.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74800.1 | 0 | Galactosyltransferase family protein |
| NR | XP_004508800.1 | 0 | PREDICTED: probable beta-1,3-galactosyltransferase 19-like [Cicer arietinum] |
| Swissprot | tr|Q9LV16|B3GTJ_ARATH | 0 | Probable beta-1,3-galactosyltransferase 19 |
| trEMBL | tr|K7KMM0|K7KMM0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G01570.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00247 | 195411 | 199212 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT31 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000247s00015515.1 | PF00337.17 | Gal-bind_lectin | 149 | 333 | 3.00E-38 |
| Glyur000247s00015515.1 | PF01762.16 | Galactosyl_T | 381 | 561 | 1.70E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.711 |
| SRR1783600 | control | 10.966 |
| SRR1783602 | moderate drought stress | 12.230 |
| SRR1811619 | moderate drought stress | 11.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.448 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.782 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.962 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.645 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.866 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.936 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.581 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.708 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.684 |
| SRR2967015 | Control (Tissue:root) | 12.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.286 |
| SRR9715740 | Leave | 3.273 |
| SRR9715741 | Leave | 2.942 |
| SRR9715739 | Root | 5.849 |
| SRR9715742 | Root | 5.602 |
| SRR9715743 | Root | 5.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.967 |
| SRR8749028 | MeJA induced 9h | 2.854 |
| SRR8749029 | MeJA induced 9h | 1.501 |
| SRR8749030 | Uninduced | 1.733 |
| SRR8749031 | Uninduced | 0.872 |
| SRR8749032 | Uninduced | 1.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.585 |
| SRR8400027 | Control-Root | 10.426 |