Gene detail information of Glyur000248s00011298.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20420.10ATP citrate lyase (ACL) family protein
NRXP_003542431.10PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [Glycine max]
COGYP_001878312.14.00E-126succinyl-CoA synthetase, beta subunit [Akkermansia muciniphila ATCC BAA-835]
Swissprottr|O82662|SUCB_ARATH0Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Precursor)
trEMBLtr|I1LYN0|I1LYN0_SOYBN0Succinyl-CoA ligase subunit beta {ECO:0000256|RuleBase:RU361258}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002482010325645+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01900LSC2 EC:6.2.1.4 6.2.1.5 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Propanoate metabolismmap00640


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0005524  ATP binding

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000248s00011298.1PF08442.5ATP-grasp_2292384.50E-61
Glyur000248s00011298.1PF00549.14Ligase_CoA3234086.80E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.327
SRR1783600control39.395
SRR1783602moderate drought stress25.702
SRR1811619moderate drought stress25.953

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain58.584
DRR006520Root Summer glycyrrhizin high producing strain57.833
DRR006521Root Winter glycyrrhizin high producing strain38.754
DRR006522Root Winter glycyrrhizin high producing strain37.959
DRR006523Root Summer glycyrrhizin low producing strain46.629
DRR006524Root Summer glycyrrhizin low producing strain46.744
DRR006525Leaf Summer glycyrrhizin high producing strain51.850
DRR006526Leaf Summer glycyrrhizin high producing strain51.445

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)175.710
SRR2868004Drought Stress(Tissue:root)139.833
SRR2967015Control (Tissue:root)121.851

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave81.654
SRR9715740Leave70.792
SRR9715741Leave84.069
SRR9715739Root22.706
SRR9715742Root52.999
SRR9715743Root46.114

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h230.695
SRR8749028MeJA induced 9h66.186
SRR8749029MeJA induced 9h155.444
SRR8749030Uninduced39.871
SRR8749031Uninduced114.791
SRR8749032Uninduced70.631

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root106.388
SRR8400027Control-Root98.212

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved