Gene detail information of Glyur000248s00011318.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54790.10ARM repeat superfamily protein
NRXP_004495091.10PREDICTED: U-box domain-containing protein 3-like isoform X1 [Cicer arietinum]
COGYP_001958455.13.00E-12hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q8GWV5|PUB3_ARATH0U-box domain-containing protein 3
trEMBLtr|V7BGD1|V7BGD1_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW16882.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00248157715162795-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000248s00011318.1PF04564.10U-box2903611.40E-24
Glyur000248s00011318.1PF00514.18Arm5906271.70E-07
Glyur000248s00011318.1PF00514.18Arm6296684.20E-06
Glyur000248s00011318.1PF00514.18Arm6737091.80E-05
Glyur000248s00011318.1PF00514.18Arm7537900.00022


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.979
SRR1783600control4.002
SRR1783602moderate drought stress3.601
SRR1811619moderate drought stress3.543

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.430
DRR006520Root Summer glycyrrhizin high producing strain5.449
DRR006521Root Winter glycyrrhizin high producing strain4.104
DRR006522Root Winter glycyrrhizin high producing strain4.057
DRR006523Root Summer glycyrrhizin low producing strain4.356
DRR006524Root Summer glycyrrhizin low producing strain4.452
DRR006525Leaf Summer glycyrrhizin high producing strain1.311
DRR006526Leaf Summer glycyrrhizin high producing strain1.347

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.484
SRR2868004Drought Stress(Tissue:root)12.973
SRR2967015Control (Tissue:root)12.771

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.996
SRR9715740Leave6.443
SRR9715741Leave5.067
SRR9715739Root1.725
SRR9715742Root4.662
SRR9715743Root3.783

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.255
SRR8749028MeJA induced 9h3.389
SRR8749029MeJA induced 9h1.333
SRR8749030Uninduced1.801
SRR8749031Uninduced2.112
SRR8749032Uninduced1.687

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.496
SRR8400027Control-Root14.698

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved