Gene detail information of Glyur000248s00011325.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23250.1 | 3.00E-57 | myb domain protein 15 |
| NR | XP_007162544.1 | 4.41E-96 | hypothetical protein PHAVU_001G161000g [Phaseolus vulgaris] |
| Swissprot | tr|Q7XBH4|MYB4_ORYSJ | 3.00E-70 | Myb-related protein Myb4 |
| trEMBL | tr|V7CYR8|V7CYR8_PHAVU | 2.00E-96 | Uncharacterized protein {ECO:0000313|EMBL:ESW34538.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00248 | 211349 | 213178 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000248s00011325.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 7.00E-14 |
| Glyur000248s00011325.1 | PF00249.26 | Myb_DNA-binding | 67 | 110 | 1.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.232 |
| SRR1783600 | control | 18.963 |
| SRR1783602 | moderate drought stress | 20.974 |
| SRR1811619 | moderate drought stress | 19.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.524 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.279 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.415 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.391 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.055 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.935 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.956 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.582 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.264 |
| SRR2967015 | Control (Tissue:root) | 2.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.032 |
| SRR9715740 | Leave | 0.059 |
| SRR9715741 | Leave | 0.158 |
| SRR9715739 | Root | 2.695 |
| SRR9715742 | Root | 8.322 |
| SRR9715743 | Root | 7.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.307 |
| SRR8749028 | MeJA induced 9h | 0.371 |
| SRR8749029 | MeJA induced 9h | 0.366 |
| SRR8749030 | Uninduced | 1.284 |
| SRR8749031 | Uninduced | 10.824 |
| SRR8749032 | Uninduced | 5.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.557 |
| SRR8400027 | Control-Root | 5.291 |