Gene detail information of Glyur000249s00015861.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04530.1 | 3.00E-139 | Metallo-hydrolase/oxidoreductase superfamily protein |
| NR | KHN44739.1 | 0 | Ribonuclease Z, chloroplastic [Glycine soja] |
| COG | YP_006440111.1 | 4.00E-51 | metallo-beta-lactamase [Turneriella parva DSM 21527] |
| Swissprot | tr|Q8L633|RNZC_ARATH | 0 | Ribonuclease Z, chloroplastic (Precursor) |
| trEMBL | tr|I1M7K2|I1M7K2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G05580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00249 | 40898 | 45185 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00784 | rnz | EC:3.1.26.11 | RNA transport | map03013 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000249s00015861.1 | PF12706.2 | Lactamase_B_2 | 123 | 331 | 6.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.774 |
| SRR1783600 | control | 8.551 |
| SRR1783602 | moderate drought stress | 7.793 |
| SRR1811619 | moderate drought stress | 7.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.596 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.576 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.867 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.573 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.971 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.113 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.754 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.415 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.479 |
| SRR2967015 | Control (Tissue:root) | 2.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.843 |
| SRR9715740 | Leave | 13.873 |
| SRR9715741 | Leave | 5.943 |
| SRR9715739 | Root | 1.834 |
| SRR9715742 | Root | 4.076 |
| SRR9715743 | Root | 3.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.113 |
| SRR8749028 | MeJA induced 9h | 7.432 |
| SRR8749029 | MeJA induced 9h | 6.644 |
| SRR8749030 | Uninduced | 1.839 |
| SRR8749031 | Uninduced | 1.123 |
| SRR8749032 | Uninduced | 2.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.417 |
| SRR8400027 | Control-Root | 9.956 |