Gene detail information of Glyur000249s00015872.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55250.30histone mono-ubiquitination 2
NRKHN44750.10E3 ubiquitin-protein ligase BRE1-like 2 [Glycine soja]
Swissprottr|Q9C895|BRE1B_ARATH0E3 ubiquitin-protein ligase BRE1-like 2
trEMBLtr|K7M511|K7M511_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G05485.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00249108602119007-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000249s00015872.1PF00097.20zf-C3HC48188557.20E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.551
SRR1783600control13.792
SRR1783602moderate drought stress18.759
SRR1811619moderate drought stress18.647

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.435
DRR006520Root Summer glycyrrhizin high producing strain16.200
DRR006521Root Winter glycyrrhizin high producing strain21.647
DRR006522Root Winter glycyrrhizin high producing strain20.942
DRR006523Root Summer glycyrrhizin low producing strain19.130
DRR006524Root Summer glycyrrhizin low producing strain19.233
DRR006525Leaf Summer glycyrrhizin high producing strain9.459
DRR006526Leaf Summer glycyrrhizin high producing strain9.518

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.204
SRR2868004Drought Stress(Tissue:root)26.790
SRR2967015Control (Tissue:root)28.008

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.265
SRR9715740Leave16.684
SRR9715741Leave17.588
SRR9715739Root1.223
SRR9715742Root9.857
SRR9715743Root9.590

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.469
SRR8749028MeJA induced 9h28.619
SRR8749029MeJA induced 9h23.717
SRR8749030Uninduced23.566
SRR8749031Uninduced22.231
SRR8749032Uninduced17.632

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.985
SRR8400027Control-Root22.433

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved