Gene detail information of Glyur000249s00015874.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G04990.24.00E-91Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_004491091.10PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cicer arietinum]
Swissprottr|Q94AD9|C3H3_ARATH2.00E-109Zinc finger CCCH domain-containing protein 3
trEMBLtr|G7KH86|G7KH86_MEDTR0Zinc finger CCCH domain protein {ECO:0000313|EMBL:AES99829.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00249129571134907-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000249s00015874.1PF00642.19zf-CCCH64891.00E-07
Glyur000249s00015874.1PF00642.19zf-CCCH1081321.30E-09
Glyur000249s00015874.1PF00642.19zf-CCCH1551778.40E-10
Glyur000249s00015874.1PF00642.19zf-CCCH2883136.10E-11
Glyur000249s00015874.1PF00642.19zf-CCCH3323563.20E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control51.459
SRR1783600control51.827
SRR1783602moderate drought stress39.583
SRR1811619moderate drought stress39.341

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.022
DRR006520Root Summer glycyrrhizin high producing strain32.995
DRR006521Root Winter glycyrrhizin high producing strain66.663
DRR006522Root Winter glycyrrhizin high producing strain64.882
DRR006523Root Summer glycyrrhizin low producing strain17.102
DRR006524Root Summer glycyrrhizin low producing strain16.528
DRR006525Leaf Summer glycyrrhizin high producing strain15.201
DRR006526Leaf Summer glycyrrhizin high producing strain14.937

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.339
SRR2868004Drought Stress(Tissue:root)21.796
SRR2967015Control (Tissue:root)15.370

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.737
SRR9715740Leave10.577
SRR9715741Leave11.654
SRR9715739Root12.094
SRR9715742Root29.535
SRR9715743Root25.308

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h72.016
SRR8749028MeJA induced 9h58.481
SRR8749029MeJA induced 9h62.077
SRR8749030Uninduced65.354
SRR8749031Uninduced62.486
SRR8749032Uninduced41.701

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.735
SRR8400027Control-Root30.617

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved