Gene detail information of Glyur000249s00015877.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G32950.10Transducin/WD40 repeat-like superfamily protein
NRXP_004491092.10PREDICTED: E3 ubiquitin-protein ligase COP1-like [Cicer arietinum]
COGYP_007097017.16.00E-18WD40 repeat-containing protein [Chamaesiphon minutus PCC 6605]
Swissprottr|P93471|COP1_PEA0E3 ubiquitin-protein ligase COP1
trEMBLtr|G7KH91|G7KH91_MEDTR0E3 ubiquitin-protein ligase COP1 {ECO:0000313|EMBL:AES99834.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00249152901162763+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10143RFWD2, COP1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Circadian rhythm - plantmap04712


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000249s00015877.1PF13923.1zf-C3HC4_247847.20E-08
Glyur000249s00015877.1PF00400.27WD404514881.50E-06
Glyur000249s00015877.1PF00400.27WD405045310.0014
Glyur000249s00015877.1PF00400.27WD405375734.00E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.024
SRR1783600control17.266
SRR1783602moderate drought stress17.736
SRR1811619moderate drought stress17.645

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.024
DRR006520Root Summer glycyrrhizin high producing strain7.040
DRR006521Root Winter glycyrrhizin high producing strain14.237
DRR006522Root Winter glycyrrhizin high producing strain13.925
DRR006523Root Summer glycyrrhizin low producing strain7.464
DRR006524Root Summer glycyrrhizin low producing strain7.871
DRR006525Leaf Summer glycyrrhizin high producing strain18.140
DRR006526Leaf Summer glycyrrhizin high producing strain18.173

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.432
SRR2868004Drought Stress(Tissue:root)33.746
SRR2967015Control (Tissue:root)18.644

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.956
SRR9715740Leave38.799
SRR9715741Leave47.292
SRR9715739Root3.912
SRR9715742Root18.352
SRR9715743Root14.573

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.420
SRR8749028MeJA induced 9h13.279
SRR8749029MeJA induced 9h11.655
SRR8749030Uninduced6.254
SRR8749031Uninduced3.715
SRR8749032Uninduced3.345

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.004
SRR8400027Control-Root27.527

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved