Gene detail information of Glyur000249s00015887.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G05010.13.00E-118ethylene-forming enzyme
NRAFK41584.10unknown [Lotus japonicus]
COGYP_003514298.14.00E-302OG-Fe(II) oxygenase [Stackebrandtia nassauensis DSM 44728]
Swissprottr|Q08507|ACCO3_PETHY01-aminocyclopropane-1-carboxylate oxidase 3
trEMBLtr|I3SMU2|I3SMU2_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK41584.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00249220404222141-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05933E1.14.17.4 EC:1.14.17.4 Cysteine and methionine metabolism map00270


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016706  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000249s00015887.1PF14226.1DIOX_N5976.00E-19
Glyur000249s00015887.1PF03171.152OG-FeII_Oxy1582547.80E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.161
SRR1783600control0.106
SRR1783602moderate drought stress0.355
SRR1811619moderate drought stress0.429

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.357
DRR006520Root Summer glycyrrhizin high producing strain37.065
DRR006521Root Winter glycyrrhizin high producing strain1.358
DRR006522Root Winter glycyrrhizin high producing strain1.063
DRR006523Root Summer glycyrrhizin low producing strain87.079
DRR006524Root Summer glycyrrhizin low producing strain85.643
DRR006525Leaf Summer glycyrrhizin high producing strain0.281
DRR006526Leaf Summer glycyrrhizin high producing strain0.433

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.746
SRR2868004Drought Stress(Tissue:root)27.348
SRR2967015Control (Tissue:root)7.606

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.336
SRR9715740Leave6.838
SRR9715741Leave47.363
SRR9715739Root15.297
SRR9715742Root184.007
SRR9715743Root151.809

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.303
SRR8749028MeJA induced 9h0.448
SRR8749029MeJA induced 9h0.337
SRR8749030Uninduced42.709
SRR8749031Uninduced27.975
SRR8749032Uninduced28.201

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root44.227
SRR8400027Control-Root15.080

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved