Gene detail

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Gene detail information of Glyur000251s00019365.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04880.1	2.00E-79	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
NR	XP_003621009.1	1.94E-171	High mobility group family [Medicago truncatula]
Swissprot	tr\|Q9MAT6\|HMG15_ARATH	1.00E-94	High mobility group B protein 15
trEMBL	tr\|G7KWP7\|G7KWP7_MEDTR	7.00E-172	High mobility group B-like protein {ECO:0000313\|EMBL:AES77227.1}

Sequence

Transcript Sequence

>Glyur000251s00019365.1
ATGGCATCTTCAAGGTCTAATTGTGTCAGCAACAGGTTATTCCCCATGAAAGAGGCAGCTCCTATGTCTCACTCGTATCCCCCACCTCTTGCAAAATATGAGGATGTTGTGGCAAATCCCAAGCTCTTCATGATTCCCATTATTGGTGGAAAAGAACTAGATTTGTGTCGCCTCTTCATTGAAGTGACCTCTCGTGGAGGGTTTGAGAAGCTGATTAGAGAGAGAAGATGGAAAGAAGTAACTGCAGTTTTCAATTTTCCATCAACAGCCACAAATGCTTCCTTTGTGCTGCGGAAGTACTATTCTTCATTGCTTTACCACTATGAACAAATCTACTATTTCAAAGCCAACCGGTGGACCCCAGCAACCTCTGATGCTCTGCAGAATCATTCAACCATACCAGTTCCTGCTCAAAGAACACAATTTTCACAGCCTTCTCCAGGAATACAATCAGCTGTTTTTCAACAGTCAAGGGTTAATGCTTCTGATTTGCTTCAAGTGTCTTTGGCAGGATCTCCAGTGACTGGAGTCATTGATGGGAAGTGTGAAAGTGCATATCTAGTTTCAGTTTCAGTAGGTTCGCAGACTCTCAAAGGTGTGCTTTATGAGGCTCCACAAACCCCTCTATTGTCTGCATCTGCATCAAATCATCAAAGCATTATGTTTAGGAACAACAATCCCTCTGCTGCATTGGGTGTCCAACGCCAACGNCGCCGTCGCAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCTAATAGGAGTGGTTACAATTTCTTCTTTGCTGAGCAGCATGCAAAACTAAAGCTACTAAACCAAACCAAGGACAGGGATGTTTATCAAGAGAAGGCTGTTAAGGATAAAGAGAGGTACAAAGCAGAAATGGAGGATTATCGCGAGAGACTGAAGATGGGCCATGTTATCAGTGATGCCGTGCCACTGCAACAACGGCTTCCCGAAGCAGATTCAGGTTTGGTGGANGTGGAGATACAAATGCTTGGTTCTCCTCAAACTCCTGAGGTGAGCAGTTCTGGTGGAAGTGACTATGATGAAGCCACTACCTATGTGGGTTCAGAGAAGCCATCCAGGGTGGGGGATTTTGAACAATTTCTTCACCATTGTGAGGGAGAAGGGGATGCCTTANTTCAACAGACTCCAAAGATGAATAACGAGAGCAAAAATATGCTAGCACTAATTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00251	9092	12160	-

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000251s00019365.1	PF01388.16	ARID	42	109	2.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.059
SRR1783600	control	0.060
SRR1783602	moderate drought stress	0.387
SRR1811619	moderate drought stress	0.351

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.177
DRR006520	Root Summer glycyrrhizin high producing strain	0.176
DRR006521	Root Winter glycyrrhizin high producing strain	0.271
DRR006522	Root Winter glycyrrhizin high producing strain	0.269
DRR006523	Root Summer glycyrrhizin low producing strain	0.521
DRR006524	Root Summer glycyrrhizin low producing strain	0.634
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.251
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.255

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.124
SRR2868004	Drought Stress(Tissue:root)	0.019
SRR2967015	Control (Tissue:root)	0.119

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.208
SRR9715741	Leave	0.000
SRR9715739	Root	0.028
SRR9715742	Root	0.000
SRR9715743	Root	0.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.409
SRR8749028	MeJA induced 9h	0.321
SRR8749029	MeJA induced 9h	0.092
SRR8749030	Uninduced	0.683
SRR8749031	Uninduced	1.043
SRR8749032	Uninduced	0.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.756
SRR8400027	Control-Root	0.199