Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000251s00019368.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13670.1	0	Protein kinase family protein
NR	XP_004491691.1	0	PREDICTED: serine/threonine-protein kinase VRK1-like [Cicer arietinum]
COG	YP_005321927.1	1.00E-15	peptidase c14 caspase catalytic subunit p20 [Saprospira grandis str. Lewin]
Swissprot	tr\|P42158\|KC1D_ARATH	2.00E-55	Casein kinase I isoform delta-like
trEMBL	tr\|I1N5F2\|I1N5F2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G53810.1}

Sequence

Transcript Sequence

>Glyur000251s00019368.1
CTATCCTATATTCTTTCTCTCTACAAAAAACCAGATGATAGATTTTATCATTACCTAATTATCATACGACGTGAAATATCGGCACTGTGTACCAATGCCAAGAACCATGCAATAGGATTTTTTCTTTTATTGACTTTTTTATTTTTTATTTATTTTCTATAACTTAATCTGCTATCATCTTATTCAACATTCGTTTCCCCTCTTCCATCAAACCCTAACCCTAATCCTCTAATTAACCCCATCAATTTCCTTTTTTTTTCCTTTCTTTTCTGTGGAATTATTTCGTTAAACTCACGCAGCAATTTCAGCCATGAATCAACGCCTATGATGATTGGGGTGGTTCCTTGTGCTGCGAATCGATTGCATGGGTTTACAGGATGCCGGAGCTTCGTAACGGACGGCGTCGTCGTCGTGCTCCGGTAAGAAGCTCCGAGCCGGTGGCGAAATACGTGAAGACTCGTGCTGCAGTAGCGGCGGCGAAGAAACAAGAACAGGAGAAGAAGCCGGTGACCGTGATATCGGAGCCGGAAGAAAGAGACAAAAAGAAGGACAGAGGAGAAATTGAAGGGATCGAGATGGGTGATGATACTGGCGGTTTGAGTGCTAATAAGGGCGTTCCTCAAGAGGATGAGGGCAACACTACCCCTTTTCCTGAGAGGGTTCAAGTAGGAGGATCACCTGTGTACAAAGTGGAGAGGAAACTGGGCAAAGGTGGGTTTGGACAGGTTTTTGTTGGCCGTCGAGTTACCGGTGGTAATGACCGCATTTCTGGCCCCGGTGCCACTGAGGTGGCTTTGAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCTTATGAGTGGCAAGTGTATAACACCCTTGGTGGAAGTCATGGAATACCTAAAGTACATTATAAAGGAAGACAAGGAGAATATTACGTGATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTCAGGCCAGGCGATGTCTGCAGAAATGGTTGCATGTATTGCTGTTGAGTCATTGTCGATCTTGGAGAAGATGCACTCAAGGGGATATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTTGGTCAGCCTGGTACACCACAAGAGAAGAAATTGTTTCTTGTCGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCACTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGAACTGTTCGATATGCCAGTGTTCACGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCGTCTTCCTGCAGAAAGGCCGGTTACCATGGCAAGGTTATCAGGGAGATAACAAATCCTTTCTTGTTTGCAAAAAAAAGATGGGAACATCTGCTGAGCTGCTATGCTGCTTCAGTCCTCCTCCTTTTAGACAGTTTCTTGAGATCGTAGTGAACATGAAATTCGATGAAGAACCTAATTATTCTAAGCTAATATCTCTGTTTGATAGTATGCTTGGACCAAATCCTGCATTGCGGCCGATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGAGGGGTAGGTTGAATATTGAGGAAGACGATGATTCCCAACCGAGAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAACGTAGCGGATGCAAGATTAGCACAGCATGTTGAGAGAGGGACTGCGGATGGCCTTCTTATTAGTTGCGTGGCTTCTTGTTCTAATCTCTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCACCTTTTTTCTTACACAAGGAATGGATCATGGAGCAGTGGGAGAAGAACTATTACATTACTTCTATAGCTGGGGCTGGTAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACACAGCAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTCCATGTGACTTCAATGGCCACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAACGCTGGATTCAGTGATCAGGTCGTTGAACTTGATTTTCTCTACCCAAGCGAGGGCATCCATAGACGATGGGACAATGGTTACAGGATTACAGCAACTGCAGCTACATGGGATCAATCTGCTCTTATATTAAGCATTCCGAGGCGCAGGCCTGGTGACGAAACTCAGGAAACTCTGCGCACATCTCAATTTCCAAGCACACATGTTAAGGACAAATGGTCAAAAAACCTTTATCTTGCTTGTCTGTGCTATGGGCGTACAGTATGCTGATTTGAGCTTTTCATGTCAAGGTATTTTTTTTGTGCAAGCAGAGAACTGTATGATTAATTATTATATAGTTATTTCTCTCCGCCCCCCATCTTTTACAAAGTTCTGTGGATGGCGGATGTGGCAGTTAATGTATACGGCTTGTATGTTCCTCCAAGTAATTGTAGGTTGTAGCAAAATATTTTGTCCAATTTCTCATTTGTTTCCGCTACACTCGTGTATAAGAAAAGAAAAATGGTTTGTATGGATATAATATTTGTGTGTAAAGGATGCAAAATAATTTAAATGTTCTGTACTCCTTAC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00251	26022	32583	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000251s00019368.1	PF00069.20	Pkinase	103	390	6.80E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.203
SRR1783600	control	31.365
SRR1783602	moderate drought stress	35.188
SRR1811619	moderate drought stress	34.917

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	65.415
DRR006520	Root Summer glycyrrhizin high producing strain	64.847
DRR006521	Root Winter glycyrrhizin high producing strain	41.875
DRR006522	Root Winter glycyrrhizin high producing strain	40.531
DRR006523	Root Summer glycyrrhizin low producing strain	76.837
DRR006524	Root Summer glycyrrhizin low producing strain	76.939
DRR006525	Leaf Summer glycyrrhizin high producing strain	53.518
DRR006526	Leaf Summer glycyrrhizin high producing strain	53.044

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	68.248
SRR2868004	Drought Stress(Tissue:root)	76.209
SRR2967015	Control (Tissue:root)	82.677

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	86.991
SRR9715740	Leave	99.543
SRR9715741	Leave	102.328
SRR9715739	Root	28.981
SRR9715742	Root	62.466
SRR9715743	Root	58.440

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.733
SRR8749028	MeJA induced 9h	74.099
SRR8749029	MeJA induced 9h	34.334
SRR8749030	Uninduced	41.053
SRR8749031	Uninduced	45.452
SRR8749032	Uninduced	42.613

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	68.238
SRR8400027	Control-Root	60.093